2024-03-29 19:50:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_207177 1251 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus homeobox D8 (HOXD8), mRNA. ACCESSION NM_207177 VERSION NM_207177.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 1251) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 1251) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1251) AUTHORS Crompton MR, MacGregor AD and Goodwin GH. TITLE cDNA cloning of a homeobox-containing gene expressed in avian myeloblastic virus-transformed chicken monoblastic leukaemia cells JOURNAL Leukemia 5 (5), 357-360 (1991) PUBMED 1674560 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000236.1. On Sep 23, 2021 this sequence version replaced NM_207177.1. ##Evidence-Data-START## Transcript exon combination :: X57158.1, SRR12888527.55069.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN08016666 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-290 JAENSK010000236.1 8552568-8552857 c 291-438 JAENSK010000236.1 8552180-8552327 c 439-1251 JAENSK010000236.1 8550928-8551740 c FEATURES Location/Qualifiers source 1..1251 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="7" /map="7" gene 1..1251 /gene="HOXD8" /note="homeobox D8" /db_xref="CGNC:49743" /db_xref="GeneID:396301" exon 1..290 /gene="HOXD8" /inference="alignment:Splign:2.1.0" CDS 168..734 /gene="HOXD8" /note="CHOX M product; homeo box D8; chox-M; homeobox protein Hox-M" /codon_start=1 /product="homeobox protein Hox-D8" /protein_id="NP_997060.1" /db_xref="CGNC:49743" /db_xref="GeneID:396301" /translation="
MSSYFVNPLYSKYKAAAAAAAAVAAGEPLPAPYYDCHFAPERQQIFTTQQEAELVQYPDCKSSSANIGEEPDHLNQSSSPAQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPASKQEGKEGEAKKETHDLEDDRAESHTN"
misc_feature 414..431 /gene="HOXD8" /note="propagated from UniProtKB/Swiss-Prot (P23459.1); Region: Antp-type hexapeptide" misc_feature order(453..467,471..473,522..524,540..542,579..581, 585..590,597..602,606..614,618..623) /gene="HOXD8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(459..461,468..470,588..590,597..602,609..611) /gene="HOXD8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 462..620 /gene="HOXD8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 621..731 /gene="HOXD8" /note="propagated from UniProtKB/Swiss-Prot (P23459.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 291..438 /gene="HOXD8" /inference="alignment:Splign:2.1.0" exon 439..1251 /gene="HOXD8" /inference="alignment:Splign:2.1.0" ORIGIN
gggagcgattatattccagccccggtcaccgcgcacacggagagcaggagaggggagcgcacggggcgcggcggcggcggcaccgggagagcagcggagaggcaccggcggcggcaccgggagcagcgccccgcgcccgctccccgcccgccgctgccccctccccgatgagctcctactttgtcaacccgctctactccaagtacaaggcggcggctgcggctgcggcggcggtggcggcgggggagcctctgcccgccccgtactacgactgtcacttcgcgcccgagagacagcagatttttacgacacagcaagaggccgagctggtacaatatcctgactgtaaatcgtccagtgctaatattggcgaggaaccagaccacttaaatcagagctcgtctcccgctcaaatgtttccctggatgagaccgcaagcagcgcccgggaggaggagagggcggcagacgtacagccgcttccagacgctggagctggagaaggagtttctctttaacccctatctgaccaggaagagacgaatcgaggtgtcccacgccctaggactcaccgagcggcaggtaaagatctggtttcagaacaggaggatgaagtggaaaaaggagaacaacaaggacaaattccccgcttccaagcaggagggaaaggaaggggaggccaaaaaggaaacacatgatctggaagacgacagagccgaaagccacacgaattaaattaattttgccctaaaagcctttgtgaagggccatcgggaacgaggagcccacggccgcagctccgggcccgtccccgccgtgtgcgtcccgcggggccgcgtcccgccccactccgcgccgtgtgggttcgggtttgggtccaactgcatccggagcgatctccagatgtccgctcgtccgctcctcctggaaatctgatagcgagttcgcagcaatacatttctaatgagatatatatatatatatatataaacagatactattttttttttgcaatattgaaagacggtgattgcgacgtacacttcctaatgataagcgccaataagcgagacatgtaccaatgctttattaatcaaacaagtgcacttgtactattttaattcttgttattttctaatctcgaataaattaaggaaatttaataaattttgaagagcaaatcttagaaatatatcaaactttctactatcgatatttgatttaaataaatcataattattcaaatataaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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