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2024-03-29 19:50:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_207177               1251 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus homeobox D8 (HOXD8), mRNA.
ACCESSION   NM_207177
VERSION     NM_207177.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1251)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 1251)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1251)
  AUTHORS   Crompton MR, MacGregor AD and Goodwin GH.
  TITLE     cDNA cloning of a homeobox-containing gene expressed in avian
            myeloblastic virus-transformed chicken monoblastic leukaemia cells
  JOURNAL   Leukemia 5 (5), 357-360 (1991)
   PUBMED   1674560
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAENSK010000236.1.
            
            On Sep 23, 2021 this sequence version replaced NM_207177.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X57158.1, SRR12888527.55069.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN08016666 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-290               JAENSK010000236.1  8552568-8552857     c
            291-438             JAENSK010000236.1  8552180-8552327     c
            439-1251            JAENSK010000236.1  8550928-8551740     c
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="7"
                     /map="7"
     gene            1..1251
                     /gene="HOXD8"
                     /note="homeobox D8"
                     /db_xref="CGNC:49743"
                     /db_xref="GeneID:396301"
     exon            1..290
                     /gene="HOXD8"
                     /inference="alignment:Splign:2.1.0"
     CDS             168..734
                     /gene="HOXD8"
                     /note="CHOX M product; homeo box D8; chox-M; homeobox
                     protein Hox-M"
                     /codon_start=1
                     /product="homeobox protein Hox-D8"
                     /protein_id="NP_997060.1"
                     /db_xref="CGNC:49743"
                     /db_xref="GeneID:396301"
                     /translation="
MSSYFVNPLYSKYKAAAAAAAAVAAGEPLPAPYYDCHFAPERQQIFTTQQEAELVQYPDCKSSSANIGEEPDHLNQSSSPAQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPASKQEGKEGEAKKETHDLEDDRAESHTN"
     misc_feature    414..431
                     /gene="HOXD8"
                     /note="propagated from UniProtKB/Swiss-Prot (P23459.1);
                     Region: Antp-type hexapeptide"
     misc_feature    order(453..467,471..473,522..524,540..542,579..581,
                     585..590,597..602,606..614,618..623)
                     /gene="HOXD8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(459..461,468..470,588..590,597..602,609..611)
                     /gene="HOXD8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    462..620
                     /gene="HOXD8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    621..731
                     /gene="HOXD8"
                     /note="propagated from UniProtKB/Swiss-Prot (P23459.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            291..438
                     /gene="HOXD8"
                     /inference="alignment:Splign:2.1.0"
     exon            439..1251
                     /gene="HOXD8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gggagcgattatattccagccccggtcaccgcgcacacggagagcaggagaggggagcgcacggggcgcggcggcggcggcaccgggagagcagcggagaggcaccggcggcggcaccgggagcagcgccccgcgcccgctccccgcccgccgctgccccctccccgatgagctcctactttgtcaacccgctctactccaagtacaaggcggcggctgcggctgcggcggcggtggcggcgggggagcctctgcccgccccgtactacgactgtcacttcgcgcccgagagacagcagatttttacgacacagcaagaggccgagctggtacaatatcctgactgtaaatcgtccagtgctaatattggcgaggaaccagaccacttaaatcagagctcgtctcccgctcaaatgtttccctggatgagaccgcaagcagcgcccgggaggaggagagggcggcagacgtacagccgcttccagacgctggagctggagaaggagtttctctttaacccctatctgaccaggaagagacgaatcgaggtgtcccacgccctaggactcaccgagcggcaggtaaagatctggtttcagaacaggaggatgaagtggaaaaaggagaacaacaaggacaaattccccgcttccaagcaggagggaaaggaaggggaggccaaaaaggaaacacatgatctggaagacgacagagccgaaagccacacgaattaaattaattttgccctaaaagcctttgtgaagggccatcgggaacgaggagcccacggccgcagctccgggcccgtccccgccgtgtgcgtcccgcggggccgcgtcccgccccactccgcgccgtgtgggttcgggtttgggtccaactgcatccggagcgatctccagatgtccgctcgtccgctcctcctggaaatctgatagcgagttcgcagcaatacatttctaatgagatatatatatatatatatataaacagatactattttttttttgcaatattgaaagacggtgattgcgacgtacacttcctaatgataagcgccaataagcgagacatgtaccaatgctttattaatcaaacaagtgcacttgtactattttaattcttgttattttctaatctcgaataaattaaggaaatttaataaattttgaagagcaaatcttagaaatatatcaaactttctactatcgatatttgatttaaataaatcataattattcaaatataaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]