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2020-11-27 00:35:37, GGRNA.v2 : RefSeq release 202 (Sep, 2020)

LOCUS       NM_205386               1820 bp    mRNA    linear   VRT 25-JUN-2020
DEFINITION  Gallus gallus sensory organ homeobox (SOHO1), mRNA.
ACCESSION   NM_205386
VERSION     NM_205386.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1820)
  AUTHORS   Deitcher DL, Fekete DM and Cepko CL.
  TITLE     Asymmetric expression of a novel homeobox gene in vertebrate
            sensory organs
  JOURNAL   J. Neurosci. 14 (2), 486-498 (1994)
   PUBMED   7905512
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from U35815.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: U35815.1, S69380.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1820
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /map="4"
     gene            1..1820
                     /gene="SOHO1"
                     /gene_synonym="SOHO-1"
                     /note="sensory organ homeobox"
                     /db_xref="CGNC:49762"
                     /db_xref="GeneID:396346"
     exon            1..249
                     /gene="SOHO1"
                     /gene_synonym="SOHO-1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    21..23
                     /gene="SOHO1"
                     /gene_synonym="SOHO-1"
                     /note="upstream in-frame stop codon"
     CDS             36..815
                     /gene="SOHO1"
                     /gene_synonym="SOHO-1"
                     /note="sensory organ homeobox protein SOHo"
                     /codon_start=1
                     /product="sensory organ homeobox"
                     /protein_id="NP_990717.1"
                     /db_xref="CGNC:49762"
                     /db_xref="GeneID:396346"
                     /translation="
MVQLGGGRGAPPPLLAPPSAFSIDSILQPGPRCQAREQGRARCALPEDEEEEEEEEEGPAEEHPTKGSTDSGSERLLAEGPRRADAEAEGAVSPLSTERFRGCRQPSLRDTGGCGRESGRCSAAGGKKKTRTIFSKSQVFQLESTFDVKRYLSSAERAGLAAALHLTETQVKIWFQNRRNKLKRQLSAEPEGPGQAEPPGEPPPPPAASFSFPSLYKDSALFSRCLLPLPFPLFYPGSAIPYLCLPGPVKHFSLLDGDV"
     misc_feature    order(417..431,435..437,486..488,504..506,543..545,
                     549..554,561..566,570..578,582..587)
                     /gene="SOHO1"
                     /gene_synonym="SOHO-1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    423..584
                     /gene="SOHO1"
                     /gene_synonym="SOHO-1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:278475"
     misc_feature    order(423..425,432..434,552..554,561..566,573..575)
                     /gene="SOHO1"
                     /gene_synonym="SOHO-1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            250..1805
                     /gene="SOHO1"
                     /gene_synonym="SOHO-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
tccgccgccactcctgcggttaggctcagcgcgccatggtgcagctcgggggaggccgcggagccccaccgcctctcctggccccaccgtcggccttcagcatcgacagcatcctgcagcccggtccccgctgccaggcccgggagcaggggagggcccgctgcgcgctgccggaggacgaggaggaggaggaggaggaagaagaggggcctgcggaggaacaccccactaaaggctccaccgactcgggcagcgagaggctgctggcggaagggccgcgccgcgcggatgccgaggccgaaggcgcggtttcaccgctctccacggagaggttccgcggatgccgacagccgtcgctgcgggataccgggggctgcggtagagagagcggcaggtgttcagcggcgggaggcaagaagaagacgcggaccatcttctccaagagccaggtcttccagctggagtccaccttcgacgtgaagcgctacctgagcagcgccgagcgggccggtctggccgccgcgctgcacctcaccgagacgcaggtgaagatctggttccagaaccgccgcaacaagctcaagagacagctgtcggctgaacccgagggtccgggccaagcggaacccccaggggagcctcctccgcctcccgccgcctctttctccttcccgtccctatacaaggacagcgccctgttcagccgctgcctgctgccactcccctttcctctgttctacccgggcagcgccatcccctacctctgccttcccggtccggtcaagcacttcagcctgctggacggggacgtatagcgtctcacctcggcccccgccctgtctcttgcagggggccgatggtccctgtggcacagccgtaccaccatcagctttcgccccgacacgcggcagccgctcccaggcccggggtcccccacacgctgccgtgtgccgtcgtgtcagaggagcttcaacgagcgctgcactctgctcgagacggagaagaacggagctgccaaagaaaccgggatgcgctgtgtctcctttccctccacagcctttccgtggccgcagtttaggaaagatgatatctgcctcagtccacgggaatggtgccatcgcggctgcccccgcaccgtaccgccacccgagagcgttgggtacagccccatccactccgtacgctcctctatctcacattctccgcctttagtacaccttcaattaacgcttccccatctctgacactatcaaaatgcagacacctctctaaatctctgtagcttctctgaattttgaattttcgaaccaaacaagtcctctgtcacactttgtgctaaccggttcccaaatcagggcccgtctgatgtttggcgcacaagttactcatgctccttacgctaaccccgcccccggttgctcaggggattattttatctgctgccctactgtaacgaagtgctttcttttgttttttgttttaatcccccttaaatctccaaccacatttgtcttcttttggtttccgagttcacacgctttatattacaaattgggaaataaaacttttctatcagaaacccgagctgcatgcctgttccgtacagccgctccagggcagtgtccaaagaaagacgtttcctagagtgcatcgacgggtgtttgttttaaaaataaaggttgaacgtgcaatcgtggtgtggcgaaattcagaagtgcgtgctaaaatgggagacttgttgagttttccggagggaaaaaaaaaataataaaatgaaaaaaaaaataaagaaaagaaaaagagaaaaaaaaaaaaaaaag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]