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2020-11-27 00:20:42, GGRNA.v2 : RefSeq release 202 (Sep, 2020)

LOCUS       NM_205249               1419 bp    mRNA    linear   VRT 26-JUN-2020
DEFINITION  Gallus gallus homeobox D12 (HOXD12), mRNA.
ACCESSION   NM_205249
VERSION     NM_205249.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1419)
  AUTHORS   Kamiyama N, Seki R, Yokoyama H and Tamura K.
  TITLE     Heterochronically early decline of Hox expression prior to
            cartilage formation in the avian hindlimb zeugopod
  JOURNAL   Dev. Growth Differ. 54 (6), 619-632 (2012)
   PUBMED   22708793
  REMARK    GeneRIF: Expression of Hoxd11/Hoxd12 in the chick hindlimb
            decreased and disappeared from the presumptive zeugopod region
            before cartilage formation.
REFERENCE   2  (bases 1 to 1419)
  AUTHORS   Kataoka K, Yoshitomo-Nakagawa K, Shioda S and Nishizawa M.
  TITLE     A set of Hox proteins interact with the Maf oncoprotein to inhibit
            its DNA binding, transactivation, and transforming activities
  JOURNAL   J. Biol. Chem. 276 (1), 819-826 (2001)
   PUBMED   11036080
REFERENCE   3  (bases 1 to 1419)
  AUTHORS   Mackem S and Mahon KA.
  TITLE     Ghox 4.7: a chick homeobox gene expressed primarily in limb buds
            with limb-type differences in expression
  JOURNAL   Development 112 (3), 791-806 (1991)
   PUBMED   1682126
REFERENCE   4  (bases 1 to 1419)
  AUTHORS   Izpisua-Belmonte JC, Tickle C, Dolle P, Wolpert L and Duboule D.
  TITLE     Expression of the homeobox Hox-4 genes and the specification of
            position in chick wing development
  JOURNAL   Nature 350 (6319), 585-589 (1991)
   PUBMED   1673231
REFERENCE   5  (bases 1 to 1419)
  AUTHORS   Nohno T, Noji S, Koyama E, Ohyama K, Myokai F, Kuroiwa A, Saito T
            and Taniguchi S.
  TITLE     Involvement of the Chox-4 chicken homeobox genes in determination
            of anteroposterior axial polarity during limb development
  JOURNAL   Cell 64 (6), 1197-1205 (1991)
   PUBMED   1672266
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from X62019.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X62019.1, JF317555.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1419
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="7"
                     /map="7"
     gene            1..1419
                     /gene="HOXD12"
                     /note="homeobox D12"
                     /db_xref="CGNC:7046"
                     /db_xref="GeneID:396178"
     exon            1..637
                     /gene="HOXD12"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    58..60
                     /gene="HOXD12"
                     /note="upstream in-frame stop codon"
     CDS             76..876
                     /gene="HOXD12"
                     /note="Ghox 4.7; homeo box D12; chox-4F; chox-4.7;
                     ghox-4.7; homeobox protein Hox-4F; homeobox protein
                     Hox-4.7; Hox D12"
                     /codon_start=1
                     /product="homeobox protein Hox-D12"
                     /protein_id="NP_990580.1"
                     /db_xref="CGNC:7046"
                     /db_xref="GeneID:396178"
                     /translation="
MCDRSLYRSGYVGSLLNLQSPDSFYFPNLRANGSQLAALPTISYPRSSIPWTCPSPCAAQPQGHAFGGAAQPYLPGSVPISISSNSNKECLEENSKYYAHDASSKQEERCRQRQSFANDPTITHAANLKPAKYDHSSLPRSLHGSAALFEVNSCTSSLKEDIKNSVNLNLTVQPAAVQSCLRPSVQDGLPWCPTQGRSRKKRKPYTKQQIAELENEFLLNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVMREQALSMY"
     misc_feature    order(670..684,688..690,739..741,757..759,796..798,
                     802..807,814..819,823..831,835..840)
                     /gene="HOXD12"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    676..837
                     /gene="HOXD12"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:278475"
     misc_feature    order(676..678,685..687,805..807,814..819,826..828)
                     /gene="HOXD12"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            638..1403
                     /gene="HOXD12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
tcgttttaggctttccgcttattccctgttgtaactaaatactgctgtaagaacagctgaagtcctttgttggaaatgtgtgatcgcagtctctacagatctggctacgttggttctctcttgaacttgcaatctccagattccttttattttcccaatttgcgggctaatggcagtcagttggcggctctgcccaccatttcctacccccggagctcgatcccgtggacgtgccccagtccgtgcgcagcccagccgcagggccacgcgttcggcggcgcggcgcagccgtacctccccggctccgttccaatcagcatcagctccaacagcaacaaagagtgcctggaagaaaacagtaaatattacgcccacgacgcgagctccaaacaagaggaaagatgcaggcagaggcaatctttcgcaaatgacccaactattactcacgcagccaacttaaagcccgcaaagtatgaccactcgagcctgccgaggagcttgcacggctcggccgctctttttgaagtgaattcctgcacttccagcctaaaggaggacatcaagaattcggtcaacttgaacctgacagttcagcccgcggcagtccagtcatgcctcagaccttcagtgcaggatggtttgccttggtgccccacccaggggagatcgcgaaagaaacggaaaccgtacacaaaacagcaaatcgccgaattggaaaacgagtttctcctcaatgagtttattaaccgacagaagaggaaagaactatcaaacagactgaatttaagcgaccagcaagtgaaaatttggtttcagaaccgacgaatgaaaaagaaaagagtggtaatgcgcgagcaggcgctctctatgtactagcgcggcgcccgcccgttcccgcatgaacttgcgttcgccccgtagagtagcgtgtggtcgcggctgcgaggcgggagctgggtgggttttcccctttaagccgagctctcggaacgcgtaggatccccgcgtgcgtcggcaaccgctgagctcttaggcagagcgaagaagacgagccagcccagcactgaaacccgtattatcagcttttccccctttctttctccttttatatagatcttctcccgcttctaaccccctctttccccggagaacgtgcggcgctaaactaaaatcgatgccttttaactgtatgtaaacaccactttgcaggaaaaaaaaaaaaagaaaaaaaagaataaaagaataatgcctagtaaagacgtctgtaaatgccggctggtcccttcatgtgttccccgcttctgaaggcgagcatgcggcgctcgcgtgttttgtggtttggaataacctgttggagcacagatcgcacaaagcggttaccaaataaacctttttagttttcaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]