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2019-03-25 15:10:58, GGRNA.v2 : RefSeq release 92 (Jan, 2019)

LOCUS       NM_204990                886 bp    mRNA    linear   VRT 10-NOV-2018
DEFINITION  Gallus gallus Mix paired-like homeobox (MIXL1), mRNA.
ACCESSION   NM_204990
VERSION     NM_204990.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Peale FV Jr, Sugden L and Bothwell M.
  TITLE     Characterization of CMIX, a chicken homeobox gene related to the
            Xenopus gene mix.1
  JOURNAL   Mech. Dev. 75 (1-2), 167-170 (1998)
   PUBMED   9739137
REFERENCE   2  (bases 1 to 886)
  AUTHORS   Stein S, Roeser T and Kessel M.
  TITLE     CMIX, a paired-type homeobox gene expressed before and during
            formation of the avian primitive streak
  JOURNAL   Mech. Dev. 75 (1-2), 163-165 (1998)
   PUBMED   9739135
REFERENCE   3  (bases 1 to 886)
  AUTHORS   Peale FV Jr, Mason K, Hunter AW and Bothwell M.
  TITLE     Multiplex display polymerase chain reaction amplifies and resolves
            related sequences sharing a single moderately conserved domain
  JOURNAL   Anal. Biochem. 256 (2), 158-168 (1998)
   PUBMED   9473273
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from U34615.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: U34615.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Leghorn"
     gene            1..886
                     /gene="MIXL1"
                     /gene_synonym="CMIX"
                     /note="Mix paired-like homeobox"
                     /db_xref="CGNC:66215"
                     /db_xref="GeneID:395838"
     exon            1..310
                     /gene="MIXL1"
                     /gene_synonym="CMIX"
                     /inference="alignment:Splign:2.1.0"
     CDS             2..634
                     /gene="MIXL1"
                     /gene_synonym="CMIX"
                     /note="homeodomain protein MIX; mix.1 homeobox-like
                     protein; MIX1 homeobox-like protein 1; CMIX homeobox; Mix1
                     homeobox-like 1"
                     /codon_start=1
                     /product="homeobox protein MIXL1"
                     /protein_id="NP_990321.1"
                     /db_xref="CGNC:66215"
                     /db_xref="GeneID:395838"
                     /translation="
MAALRFGPPPAELPAVPPSCPPGRWLCGTAGGSGGGPGAAPAPLASLPPAAEGAPSAQRRKRTSFTAAQLETLELVFQDTMYPDIYLRERLADATQIPESRIQVWFQNRRAKSRRQRGPPRPGAPAPPPPPPQRSPCGAAPLLRAREEHREWPPRAAGPPGSALRPHGGSGGAPAGPYPPRPAFPLPAGGGFSELGTEWEENAIGAFRAL"
     misc_feature    order(176..190,194..196,245..247,263..265,302..304,
                     308..313,320..325,329..337,341..346)
                     /gene="MIXL1"
                     /gene_synonym="CMIX"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    182..343
                     /gene="MIXL1"
                     /gene_synonym="CMIX"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:278475"
     misc_feature    order(182..184,191..193,311..313,320..325,332..334)
                     /gene="MIXL1"
                     /gene_synonym="CMIX"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            311..880
                     /gene="MIXL1"
                     /gene_synonym="CMIX"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      872
                     /gene="MIXL1"
                     /gene_synonym="CMIX"
     polyA_site      880
                     /gene="MIXL1"
                     /gene_synonym="CMIX"
ORIGIN      
catggccgcgctgcgcttcgggccgcccccggcggagctgcccgcggtaccgccctcctgcccgccgggccggtggctgtgcgggacggccgggggcagcgggggagggcccggcgcggccccggcgcccctcgcgtcgctgcccccggcggcggagggggctccgtcggcgcaacgtcggaaacggacgagcttcacggcggcgcagctggagacgctggagctggtgttccaggacaccatgtaccccgacatctacctgcgggagcggctggccgacgccacgcagatccccgagtcccgcatccaggtctggttccagaaccgccgcgccaagtctcgccggcagcggggaccgccccggccgggtgcccccgcaccgccaccgcccccgccccagcgctcgccgtgcggcgcggccccgctgctccgcgcccgggaggagcaccgcgagtggccgccccgcgccgccggcccgcccggctccgcgctgcgcccgcacggggggagcggaggcgccccggccgggccctacccgccccgccccgcgttccccctcccggccggcggcggcttctcggagctgggaacggagtgggaggagaacgccatcggcgccttccgagccctctgacggccggccggccctgcccgcgcctctttgcactttatcccgcggactgcgcctatttatgcacgggagatgggggcggctgcgccggttgccggcaccgtgttacactgtttacagcttctatttaacctttttaagcccccaagccgaccgaatgcactgttctagggggggtgggggtcgggaggggtccgttgttactttttgagacagaaaaataaataaaagttcccaattctgctctgcaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]