2024-03-29 14:37:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_204614 2614 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus caudal type homeobox 4B (CDX4B), mRNA. ACCESSION NM_204614 VERSION NM_204614.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 2614) AUTHORS Joshi P, Darr AJ and Skromne I. TITLE CDX4 regulates the progression of neural maturation in the spinal cord JOURNAL Dev Biol 449 (2), 132-142 (2019) PUBMED 30825428 REMARK GeneRIF: Results show that in the spinal cord, caudal type homeobox 4 (CDX4) is part of the gene regulatory network controlling the sequential and progressive transition of states from high to low potency during neural progenitor maturation. REFERENCE 2 (bases 1 to 2614) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 3 (bases 1 to 2614) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 2614) AUTHORS Ehrman LA and Yutzey KE. TITLE Anterior expression of the caudal homologue cCdx-B activates a posterior genetic program in avian embryos JOURNAL Dev Dyn 221 (4), 412-421 (2001) PUBMED 11500978 REFERENCE 5 (bases 1 to 2614) AUTHORS Serrano J, Scavo L, Roth J, de la Rosa EJ and de Pablo F. TITLE A novel chicken homeobox-containing gene expressed in neurulating embryos JOURNAL Biochem Biophys Res Commun 190 (1), 270-276 (1993) PUBMED 7678491 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000071.1. On Sep 23, 2021 this sequence version replaced NM_204614.1. ##Evidence-Data-START## Transcript exon combination :: AF353624.1, SRR13267651.22564.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-585 JAENSK010000071.1 12065864-12066448 586-731 JAENSK010000071.1 12071108-12071253 732-2614 JAENSK010000071.1 12073756-12075638 FEATURES Location/Qualifiers source 1..2614 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="4" /map="4" gene 1..2614 /gene="CDX4B" /gene_synonym="cCdx-B; CDX4; CDXB; CHOX-CAD2; ox-cad2" /note="caudal type homeobox 4B" /db_xref="CGNC:49264" /db_xref="GeneID:395320" exon 1..585 /gene="CDX4B" /gene_synonym="cCdx-B; CDX4; CDXB; CHOX-CAD2; ox-cad2" /inference="alignment:Splign:2.1.0" misc_feature 120..122 /gene="CDX4B" /gene_synonym="cCdx-B; CDX4; CDXB; CHOX-CAD2; ox-cad2" /note="upstream in-frame stop codon" CDS 147..938 /gene="CDX4B" /gene_synonym="cCdx-B; CDX4; CDXB; CHOX-CAD2; ox-cad2" /note="caudal-type homeobox protein CDXB; caudal type homeobox 4; caudal type homeo box transcription factor 4; caudal type homeobox transcription factor 4" /codon_start=1 /product="homeobox protein CHOX-CAD2" /protein_id="NP_989945.1" /db_xref="CGNC:49264" /db_xref="GeneID:395320" /translation="
MYVSSLLDKETSMYPGPARCSNNNLPVQNFVPAPPYSDYMGYHHVPAPDSHGQPAGAWGPHYGPQREDWNAYGPCPGPSGTAAAAQLSGSSPGQGSYSPAEYSSLHPAAPGGLPPAGTVGTQQVSPTNQRHSSYEWMRKTVPTNTTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELAANLGLSERQVKIWFQNRRAKERKIIKKKISQFDGSGGSVQSDSGSLSPNEITSSLFPPPHGINVLQSADIHQVIVSE"
misc_feature 183..587 /gene="CDX4B" /gene_synonym="cCdx-B; CDX4; CDXB; CHOX-CAD2; ox-cad2" /note="Caudal like protein activation region; Region: Caudal_act; pfam04731" /db_xref="CDD:428094" misc_feature order(606..617,621..623,672..674,690..692,729..731, 735..740,747..752,756..764,768..770) /gene="CDX4B" /gene_synonym="cCdx-B; CDX4; CDXB; CHOX-CAD2; ox-cad2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(609..611,618..620,738..740,747..752,759..761) /gene="CDX4B" /gene_synonym="cCdx-B; CDX4; CDXB; CHOX-CAD2; ox-cad2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 612..770 /gene="CDX4B" /gene_synonym="cCdx-B; CDX4; CDXB; CHOX-CAD2; ox-cad2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 586..731 /gene="CDX4B" /gene_synonym="cCdx-B; CDX4; CDXB; CHOX-CAD2; ox-cad2" /inference="alignment:Splign:2.1.0" exon 732..2614 /gene="CDX4B" /gene_synonym="cCdx-B; CDX4; CDXB; CHOX-CAD2; ox-cad2" /inference="alignment:Splign:2.1.0" ORIGIN
acagttgataataaaagaggatgaagtagaagattccaagcagtttggcactattaggaaaaaaaatcaagctactattttttaagcagcaaaagaaaatacagaagagcaagatgttgtgacaacgtttacaatctgcaagcatcatgtatgtgagctctctcttggataaagagaccagcatgtatccaggacctgcaaggtgcagcaacaacaacctgccagtgcagaactttgtgcctgctcccccctactcagactacatggggtatcaccacgtgccagctccagacagccacggacagcccgcgggagcctggggaccccactacggcccccagagggaggactggaacgcttacggcccgtgcccagggccctccggcacggctgctgccgcacagctcagcggctcctctcctgggcagggctcctacagtccagctgagtacagctccctccatcccgctgcacccggggggttacctcctgcaggcaccgttggcacacagcaggtctcacccaccaaccaaaggcacagctcttacgaatggatgaggaaaacggtgccaactaacactactggtaaaacaagaacaaaagagaagtaccgggttgtttacacagaccatcagagactagaattagagaaggaatttcactgcaacagatacattacaataaggagaaagtcagaacttgcagcaaaccttggactatctgaaagacaggtaaaaatctggttccagaatcgccgagccaaagaaagaaaaataatcaagaagaaaatctctcagtttgatggcagtgggggctcagttcagagtgactctggttcactcagccctaatgaaataacaagttccctgttcccaccaccacacggaataaatgtattacagtctgctgacatccatcaggtcatagtttcagaatgaacagtgggggaaaaagaaaaacagaaaaaaagagttgtatggattttttgtttttgtttttaactccctctattgaaaactcaattttgcaaagcaccattcttgtttaactaccttcagagtacttatttccacatagaggatctggaactattaccaaaatatttcaattaaagaaatctcagggagttcgtgctgctgctaatactcatcactcaaaatcttttgaatagaagataatttacatcagataccgaagcagaaaaagatactgctgaagattcaagcaaacctaattctagtctgctcatgtatacaaagaaaactgtcagtgaattgattatagagtaatactgcataaaatgtaagatgctggatgtatttagtttgttacattttatataattaaacagtagattttataaatattcacatttaatgtgtactgaaaattaagtcattttttgaaaacaactttttaaacacttaaacactcaagagacataacaatgttacgcctggcgacacattgcgtcccattaaataaaatgaatagtctttgtattctatgcagttctatccaagcatggcagtctcctaagcaacagatatataacaacacaccaagcctgataaaatttgttcagttgtaaaaaaaaaatgcaacaaactgtgatgtgtgttaataaataccaaatagtttgaagatgtaaatattacttgtacttccatcttcagtgaacgcatgtaataccatcgaaaaattagaggagaaatgtaatggaaatagaactgttactaccatcacactaccaaaaagcaaattaagaatttgattaatatctctacagctttctcaaataacagacatgagccaccaatttcatgtgtgacacttatttcaggttaaaaggcagactttgtatttcaaagctgttattgagcagcttagcattcactgtcacagcaagcacgtacctaatgtgtgctccagaaggagcacaaatttgggataaacatgctcacagagcggttagcttttgttactggtccacactgtcagaggagatagtatcagtatctagaaggcaactgatgagactgaaaaaagtagcaagaaaacacaaagtgctagaaaaaacctagacatttcagtagtcctacttatgggcatttcctaatatgagcttctctgctgcacagaattaagtgctccatataaaagccttcatttcattggaaaggttatcaaaaaagaaaaatagaaagtacagttatctggcatatgaaaattcatacatcactcttcatttcaacagcatcagactcctggtcttagaaataacaggtcaaattctgcttagtgtcaccatgcatagataatgcactgagcaacaacaggcagaacttgtcacagcattcattatcttgattcaatacatctgcaaactaagatttgccaattatttaaagataactctattggagtaactccataaaaataattcagtcaggaactactagaataacatttctccaaaaggcattttgtgggtcattctccaatgtatttttattaatcgcctattaatgtggttgaaataaacagacatatattaatgtaaagaaactgcaaatggaaaaacatacaaatataaatatttgtaaaaactgaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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