2024-03-30 01:02:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_182653 1828 bp mRNA linear MAM 20-DEC-2022 DEFINITION Bos taurus retina and anterior neural fold homeobox 2 (RAX2), mRNA. ACCESSION NM_182653 VERSION NM_182653.1 KEYWORDS RefSeq. SOURCE Bos taurus (cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 1828) AUTHORS Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G, Roberts M, Subramanian P, Yorke JA and Salzberg SL. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol 10 (4), R42 (2009) PUBMED 19393038 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY211276.1. ##Evidence-Data-START## Transcript exon combination :: AY211276.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03145474 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1828 /organism="Bos taurus" /mol_type="mRNA" /db_xref="taxon:9913" /chromosome="7" /map="7" gene 1..1828 /gene="RAX2" /gene_synonym="QRX" /note="retina and anterior neural fold homeobox 2" /db_xref="BGD:BT18010" /db_xref="GeneID:359713" /db_xref="VGNC:VGNC:33767" CDS 49..603 /gene="RAX2" /gene_synonym="QRX" /note="Q50-type retinal homeobox protein; retina and anterior neural fold homeobox-like protein 1" /codon_start=1 /product="retina and anterior neural fold homeobox protein 2" /protein_id="NP_872594.1" /db_xref="BGD:BT18010" /db_xref="GeneID:359713" /db_xref="VGNC:VGNC:33767" /translation="
MFLSPGEGPAAEGGGPGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEVPALPFARPPTMPLSLEPWLGPGPPAVPALPRLLGSGPGLQGSFGPHAFSPAFMDGFTLEEGSLRLLAKEHVQALDRAWPSA"
misc_feature 127..306 /gene="RAX2" /gene_synonym="QRX" /note="Region: homeobox domain" misc_feature order(130..144,148..150,199..201,217..219,256..258, 262..267,274..279,283..291,295..300) /gene="RAX2" /gene_synonym="QRX" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(136..138,145..147,265..267,274..279,286..288) /gene="RAX2" /gene_synonym="QRX" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 139..297 /gene="RAX2" /gene_synonym="QRX" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
cggcacgagagtgagcactgggcagccaggtgggggcaaggaggagccatgttcctgagcccaggtgaggggccggcggctgagggtggggggccagggcccggagaggaggcccccaagaagaagcaccggaggaaccgcacaacctttaccacgtaccagctgcaccagctggagcgggcgttcgaggcctcccactacccggacgtttacagccgtgaggagctggcagccaaggtgcacctgcccgaggtgcgcgtgcaggtgtggttccagaaccgccgggccaagtggcgccgccaggagcgtctggagtccggctctggggccgtggcagccccaagactccctgaggtcccagcactgccctttgcccgccctcccaccatgccactgtccctggagccctggctgggcccagggcccccagctgtgccagccctcccacgcctcctgggctcgggcccagggttgcagggctcctttgggccccacgccttcagtccagccttcatggatggcttcaccctggaggagggttccctgcggcttctggccaaggagcacgtgcaggctctggacagggcctggccgtcggcctgagcctggtgcctgcccagcccctcctgctcagcctgtccatggccacccacaccaagtcccccacccaccaccacctacccctgccttgcagggttaactggcactgacttcaaggtggcagccagaggcgcccagccagggtgggggtccctggcctggtctccccacctgtcaaatgggtgtgtggggtgggttctgaggttcttaaggctctacggctgtaaccaggagccacagggatgttaattctgagttgatcattctaaatcctcctgcctgctcctaagtgttcaacggcagggccgccctgagagataacaatagctgcagcagttcacattaactgccccctttcactgtgtgctcccagcatgcctatcagtgtaccccaaggtggcatggccatcagccccacgttacaggagaagaaactgaggcccagagagggatagtcagtttactcaggccacagagccagtagagggtggagctctttttaggctcattgcctgactccatcacccctggcgcctaggacccaggccgggcgctaacagggcgctcccaggcagaagcagctgacactggctgaacagtcgatctttgctccccccatttatcagagcgtggcttgtctcatcaaccacagcccccatcacatctcccagcccactgaggcggggctggggccctggtagcaagacaagcgttggttctgtccaaccacgtgcccccagggctcacaaaggcatgatggccgcccctgccggggttcaactgggctccaggacaatgaggctggctgggctggggggtgtggcccaagtgcccacatgtcaaggcacctccctgtgggatgggatgagtcaggaccggagagtgtatggtggggggggggggacatggcagcaccccagttactccaggctctggccaggaagtgaccacaggtgctaggaaattccaggaatgtcgcttccaggccactctcagctggcctgctcacctcccatctcagagggcacctcacgtgaaccccagcggcccctgtgtggtttatgctgcggcagcgaggccaaccatccccccaatcattcatccaccggttccaacttacgaggacacaacagtgaacaaagcagagaaaatcccctgccctcctggagctgccactccagtgggagagaccagtgccctaactttaaaaataaataagtaaaacgtg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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