2024-03-28 23:55:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_131333 1587 bp mRNA linear VRT 09-DEC-2023 DEFINITION Danio rerio visual system homeobox 1 homolog, chx10-like (vsx1), mRNA. ACCESSION NM_131333 VERSION NM_131333.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1587) AUTHORS Hickey GJ, Wike CL, Nie X, Guo Y, Tan M, Murphy PJ and Cairns BR. TITLE Establishment of developmental gene silencing by ordered polycomb complex recruitment in early zebrafish embryos JOURNAL Elife 11, e67738 (2022) PUBMED 34982026 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1587) AUTHORS Itoh T, Inoue S, Sun X, Kusuda R, Hibi M and Shimizu T. TITLE Cfdp1 controls the cell cycle and neural differentiation in the zebrafish cerebellum and retina JOURNAL Dev Dyn 250 (11), 1618-1633 (2021) PUBMED 33987914 REFERENCE 3 (bases 1 to 1587) AUTHORS Mukaigasa K, Sakuma C and Yaginuma H. TITLE The developmental hourglass model is applicable to the spinal cord based on single-cell transcriptomes and non-conserved cis-regulatory elements JOURNAL Dev Growth Differ 63 (7), 372-391 (2021) PUBMED 34473348 REFERENCE 4 (bases 1 to 1587) AUTHORS Lahne M, Brecker M, Jones SE and Hyde DR. TITLE The Regenerating Adult Zebrafish Retina Recapitulates Developmental Fate Specification Programs JOURNAL Front Cell Dev Biol 8, 617923 (2021) PUBMED 33598455 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 1587) AUTHORS Guo R, Ge K, Wang Y, Lu M, Li F, Tian L, Gan L and Sheng D. TITLE LIM Homeobox 4 (lhx4) regulates retinal neural differentiation and visual function in zebrafish JOURNAL Sci Rep 11 (1), 1977 (2021) PUBMED 33479361 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 1587) AUTHORS D'Autilia S, Decembrini S, Casarosa S, He RQ, Barsacchi G, Cremisi F and Andreazzoli M. TITLE Cloning and developmental expression of the Xenopus homeobox gene Xvsx1 JOURNAL Dev Genes Evol 216 (12), 829-834 (2006) PUBMED 17103185 REFERENCE 7 (bases 1 to 1587) AUTHORS Wan L, Almers W and Chen W. TITLE Two ribeye genes in teleosts: the role of Ribeye in ribbon formation and bipolar cell development JOURNAL J Neurosci 25 (4), 941-949 (2005) PUBMED 15673675 REFERENCE 8 (bases 1 to 1587) AUTHORS Shen YC and Raymond PA. TITLE Zebrafish cone-rod (crx) homeobox gene promotes retinogenesis JOURNAL Dev Biol 269 (1), 237-251 (2004) PUBMED 15081370 REFERENCE 9 (bases 1 to 1587) AUTHORS Kurtzman AL and Schechter N. TITLE Ubc9 interacts with a nuclear localization signal and mediates nuclear localization of the paired-like homeobox protein Vsx-1 independent of SUMO-1 modification JOURNAL Proc Natl Acad Sci U S A 98 (10), 5602-5607 (2001) PUBMED 11331779 REFERENCE 10 (bases 1 to 1587) AUTHORS Kurtzman AL, Gregori L, Haas AL and Schechter N. TITLE Ubiquitination and degradation of the zebrafish paired-like homeobox protein VSX-1 JOURNAL J Neurochem 75 (1), 48-55 (2000) PUBMED 10854246 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF025348.2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF025348.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3505392, SAMEA4476733 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1587 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="17" /map="17" gene 1..1587 /gene="vsx1" /note="visual system homeobox 1 homolog, chx10-like" /db_xref="GeneID:30598" /db_xref="ZFIN:ZDB-GENE-990415-205" misc_feature 10..12 /gene="vsx1" /note="upstream in-frame stop codon" CDS 31..1065 /gene="vsx1" /note="transcription factor VSX1; visual system homeobox 1 protein; etID309864.17; paired-like homeobox protein" /codon_start=1 /product="visual system homeobox 1" /protein_id="NP_571408.1" /db_xref="GeneID:30598" /db_xref="ZFIN:ZDB-GENE-990415-205" /translation="
MTGREEATDEKPKVKLYPSFGIDKSRLNGSGFRSKGFAITDLLGLESELQPHQSGPGAGPNGEGQSAAVGGFSFPGGSLPLGLGFLCSLAAQQPPGAPCFLPSHIPLLQSRTESHFMQNLEQQRDVYSDDDCLSGDRNDGKNSGNSQKRKKRRHRTVFTSHQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESIINSAKSGMMGSCAPWLLGEPAGMHKKSMEIVKKAPGTPESTHSDTYSEEHKGKDSDTTWSSGANGADDSEDMAIDLSSTSKQENKSTLKRSPPRTENSSDSENES"
misc_feature 139..162 /gene="vsx1" /note="propagated from UniProtKB/Swiss-Prot (O42250.2); Region: Octapeptide motif" misc_feature 175..240 /gene="vsx1" /note="propagated from UniProtKB/Swiss-Prot (O42250.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 331..>693 /gene="vsx1" /note="Homeodomain-containing transcription factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature 409..498 /gene="vsx1" /note="propagated from UniProtKB/Swiss-Prot (O42250.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 469..483 /gene="vsx1" /note="propagated from UniProtKB/Swiss-Prot (O42250.2); Region: Nuclear localization signal. /evidence=ECO:0000269|PubMed:11331779" misc_feature order(484..498,502..504,553..555,571..573,610..612, 616..621,628..633,637..645,649..654) /gene="vsx1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 490..651 /gene="vsx1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(490..492,499..501,619..621,628..633,640..642) /gene="vsx1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 847..1062 /gene="vsx1" /note="propagated from UniProtKB/Swiss-Prot (O42250.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" ORIGIN
ggcacgaggtgaattaaagaaactgccaccatgacgggaagagaagaagctacagatgaaaaacctaaagttaaactttacccttcgttcggaatcgacaaatcacgtctgaatggatctggatttcggtccaaagggttcgcaatcacagatctcctgggtctggagtcggaacttcagccgcaccagtcaggtccaggcgcggggcccaatggagagggccagagcgcggcggttggaggattttctttcccgggaggatctttgcccttgggcttggggtttctgtgtagtttggcggcgcaacagcctcctggagccccgtgttttctcccgagccacatccctctgttgcagtcacggacggagagccacttcatgcagaatctggagcagcaaagggacgtttactccgatgatgactgcctttccggtgatcgcaatgatggaaaaaactcagggaactctcaaaagaggaaaaagagaaggcacaggacagttttcacctcccatcaacttgaggaactagagaaagccttcaatgaagcacactatccagacgtttacgcgagagaaatgctggcaatgaagacagagctaccagaggacaggatacaggtatggtttcaaaaccggcgtgcaaagtggaggaaaagggaaaagtgctggggccgtagcagcgtgatggcagagtatgggctgtatggagccatggtgcgccactccattccactcccagaatccatcatcaactctgccaagagcgggatgatgggctcatgcgctccctggcttctaggtgagccagcaggaatgcacaaaaagtctatggaaattgtgaagaaagctcctggcacgcctgaatcgacacattcagatacatattcagaggaacacaaagggaaagacagcgacacgacatggtcaagcggagctaatggagcggacgattcagaagacatggcaatagatttgtctagcacttcaaaacaagagaacaaaagcactttgaaaagatctccgcctcgcacagaaaacagcagcgattctgaaaatgagagttaaaaatggacctcaatatatggacagttttgaagagcacgtgctgtacaaggactatcagttaataggatgtctcaccttttgtttgtttgcatttctgtgtcatttaagggtttttatgttgttgcttatcaaataattgaatactagagactgttttattctgaattattttatgtttcatgtaaatagtgtttaaaaagtttgcatttatgggcattatccatctaattttaagtaagttcccatattttattttttctctgtcaaaaaaatgctgtaaggtgattacttgttcaccgctactgtgaatgtcatatttccctgttaaaatacagcatgtgtctgggtaacagaaatgattttaaagcactttacctgctgtgatgatgaatgttttgcattgataagtgtcatcaacagagcaatataatgccagcaaaaaaagaaatccacatcaccacacacacaaaaaataataactaaataaacatattttatgcttttgaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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