2024-09-08 10:30:06, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_102460 1330 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana homeobox protein 23 (AtHB23), mRNA. ACCESSION NM_102460 VERSION NM_102460.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1330) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1330) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1330) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1330) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1330) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Sep 12, 2016 this sequence version replaced NM_102460.3. FEATURES Location/Qualifiers source 1..1330 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1330 /gene="AtHB23" /locus_tag="AT1G26960" /gene_synonym="HB23; homeobox protein 23; T2P11.15; T2P11_15" /note="Encodes a homeodomain leucine zipper class I (HD-Zip I) protein." /db_xref="Araport:AT1G26960" /db_xref="GeneID:839587" /db_xref="TAIR:AT1G26960" CDS 300..1067 /gene="AtHB23" /locus_tag="AT1G26960" /gene_synonym="HB23; homeobox protein 23; T2P11.15; T2P11_15" /inference="Similar to RNA sequence, EST:INSD:DR750837.1,INSD:BP801272.1,INSD:EL986445.1, INSD:AV541106.1,INSD:DR750838.1,INSD:DR380281.1, INSD:EH800333.1,INSD:DR227492.1,INSD:DR299078.1, INSD:EL017543.1,INSD:T42871.1,INSD:AV551902.1, INSD:AA395245.1,INSD:DR750893.1,INSD:EH945538.1, INSD:ES018084.1,INSD:AU226750.1,INSD:BP801528.1, INSD:AU235961.1,INSD:DR750894.1,INSD:DR751323.1, INSD:EH965753.1,INSD:EG527791.1,INSD:BP577827.1, INSD:BP576242.1,INSD:DR751177.1" /inference="similar to RNA sequence, mRNA:INSD:AK228056.1,INSD:AY084913.1,INSD:BT009727.1" /note="homeobox protein 23 (AtHB23); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to gibberellin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein family (TAIR:AT1G69780.1); Has 11101 Blast hits to 11053 proteins in 666 species: Archae - 0; Bacteria - 4; Metazoa - 8567; Fungi - 242; Plants - 2058; Viruses - 5; Other Eukaryotes - 225 (source: NCBI BLink)." /codon_start=1 /product="homeobox protein 23" /protein_id="NP_564268.1" /db_xref="Araport:AT1G26960" /db_xref="GeneID:839587" /db_xref="TAIR:AT1G26960" /translation="
MSCNNNGLAFFPENFSLQNHHQEEEDHPQLLQDFHGFLGKRSPMNNVQGFCNLDMNGDEEYSDDGSKMGEKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQVMALKSREPIESINLNKETEGSCSDRSENISGDIRPPEIDSQFALGHPPTTTTMQFFQNSSSEQRMVKEENSISNMFCGIDDQSGFWPWLDQQQYN"
misc_feature order(510..518,522..524,573..575,591..593,630..632, 636..641,648..653,657..665,669..674) /gene="AtHB23" /locus_tag="AT1G26960" /gene_synonym="HB23; homeobox protein 23; T2P11.15; T2P11_15" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 510..671 /gene="AtHB23" /locus_tag="AT1G26960" /gene_synonym="HB23; homeobox protein 23; T2P11.15; T2P11_15" /note="Homeodomain; Region: HOX; smart00389" /db_xref="CDD:197696" misc_feature order(510..512,519..521,639..641,648..653,660..662) /gene="AtHB23" /locus_tag="AT1G26960" /gene_synonym="HB23; homeobox protein 23; T2P11.15; T2P11_15" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 675..800 /gene="AtHB23" /locus_tag="AT1G26960" /gene_synonym="HB23; homeobox protein 23; T2P11.15; T2P11_15" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:460477" ORIGIN
gggattttccaaaacatacaaaagcccatattccacccctccaaagactataatcatcccatgtctacctctctgtctcatcggctttgagtcttgtctcctattttatatactcatataataaacaaaataaaaccaaattttctaatctagctagtatttagcctataagtggtgtatactcagtcttctaattcatttcaccaccatccttcttcttctttatttagttttctttctgtactttgaaccaagacaaggtggtggagaggagaagaagaaaacaaccaacaagagacatgtcttgtaataataatggcttagctttcttccctgaaaatttcagtctccaaaaccatcaccaagaagaagaagatcaccctcaacttcttcaagacttccatgggtttctaggtaaaagatctccaatgaacaacgtgcaagggttttgtaatctagatatgaacggagatgaagaatattcagacgatggatctaagatgggagagaagaagaggagattgaacatggaacaattgaaggcactagagaaggactttgagcttggtaataaacttgaatcagatcgaaaattagagctagctcgtgccttgggattgcaacctagacaaattgctatatggttccaaaacagaagagctcgatccaaaaccaagcagcttgagaaagactatgacatgcttaagcgtcaattcgaaagtctcagagatgagaacgaagttcttcaaactcaaaatcaaaagcttcaagctcaggtaatggcattgaaaagcagagaaccaatagaatcaatcaatctgaacaaagaaacagaaggatcatgtagtgacagaagtgagaacatttctggtgacatcaggccaccggagatcgatagccaattcgccctaggccatccaccgacaactacaacgatgcagttttttcagaattcatcgtcagaacagagaatggtgaaagaagagaacagtatcagtaacatgttctgtggaattgatgaccagtctgggttctggccatggcttgaccagcaacaatacaattgaatgtggtcgatctgttcttgtttgtattaaaattttcgttttctttaagtggtcagatgaaccaattcatgtttcaagaatctatatttagtctatatgcaccaactaagctagtagtttttttgggtaatgtgatgtaagagaattaatgggggaaatattcatcatattatatgataattaatcaatcatatgggccatatgattagacattaaaaaaagtctgaaccatgtgcttttatatcgtacaactaatatccaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]