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2024-03-28 20:40:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001407494             714 bp    mRNA    linear   VRT 02-JUN-2022
DEFINITION  Gallus gallus homeobox C6 (HOXC6), mRNA.
ACCESSION   NM_001407494
VERSION     NM_001407494.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Ohya YK, Kuraku S and Kuratani S.
  TITLE     Hox code in embryos of Chinese soft-shelled turtle Pelodiscus
            sinensis correlates with the evolutionary innovation in the turtle
  JOURNAL   J Exp Zool B Mol Dev Evol 304 (2), 107-118 (2005)
   PUBMED   15643629
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Gaunt SJ.
  TITLE     Conservation in the Hox code during morphological evolution
  JOURNAL   Int J Dev Biol 38 (3), 549-552 (1994)
   PUBMED   7848839
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from JN129278.1.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-400               JN129278.1         93989-94388         c
            401-714             JN129278.1         92483-92796         c
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="33"
                     /map="33"
                     /breed="Leghorn"
     gene            1..714
                     /gene="HOXC6"
                     /gene_synonym="HOXC-6"
                     /note="homeobox C6"
                     /db_xref="CGNC:64714"
                     /db_xref="GeneID:100858368"
     CDS             1..714
                     /gene="HOXC6"
                     /gene_synonym="HOXC-6"
                     /note="homeo box C6; homeobox protein C6"
                     /codon_start=1
                     /product="homeobox C6"
                     /protein_id="NP_001394423.1"
                     /db_xref="CGNC:64714"
                     /db_xref="GeneID:100858368"
                     /translation="
MNSYFTNPSLSCHLTSGQEVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSSPFYSPQDNVVFSSSRGPYDYGSNAFYQEKDMLSSCRQNSMGHNTQTSIAQDFTSDQNRNTSQEQKTSIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLSSTLSGAGGGTAAAAADSLAKEEKREETEEEKQKE"
     misc_feature    order(424..438,442..444,493..495,511..513,550..552,
                     556..561,568..573,577..585,589..594)
                     /gene="HOXC6"
                     /gene_synonym="HOXC-6"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(430..432,439..441,559..561,568..573,580..582)
                     /gene="HOXC6"
                     /gene_synonym="HOXC-6"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    433..591
                     /gene="HOXC6"
                     /gene_synonym="HOXC-6"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      
atgaattcctatttcacaaacccatctttatcctgccatctaaccagtggccaagaggtgcttcccaacgtagccctcaattcaactgcctatgaccctgtcaggcatttttctacttatggagcagccgttgctcaaaaccggatttattcttctcctttttattcaccgcaagataatgttgtgtttagctccagccgaggaccttatgactatggatctaatgctttttaccaagaaaaagacatgctttctagctgcaggcaaaattctatgggacataatacacagacatcaatcgcacaggattttaccagtgaccaaaacaggaacacttcgcaagaacaaaaaactagcattcaaatatacccatggatgcagcgtatgaactcccacagtggcgtgggctacggggccgaccgccggcggggccgccagatttattcccgttaccaaacgttggagctggagaaggaatttcacttcaaccgctacctgacgaggcggaggcggatcgaaatcgccaacgctctctgcctgacggaacggcagatcaagatttggttccagaaccgaaggatgaaatggaaaaaagaaagcaacttaagctcgaccctctccggggcgggtggtggaaccgcggccgccgccgccgatagtttggccaaggaggagaagcgagaagagacagaggaggagaagcagaaggagtga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]