2024-04-27 01:34:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001397963 3780 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus homeobox B1 (HOXB1), transcript variant 3, mRNA. ACCESSION NM_001397963 VERSION NM_001397963.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 3780) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 2 (bases 1 to 3780) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3780) AUTHORS Peale FV Jr, Mason K, Hunter AW and Bothwell M. TITLE Multiplex display polymerase chain reaction amplifies and resolves related sequences sharing a single moderately conserved domain JOURNAL Anal Biochem 256 (2), 158-168 (1998) PUBMED 9473273 REFERENCE 4 (bases 1 to 3780) AUTHORS Sundin OH, Busse HG, Rogers MB, Gudas LJ and Eichele G. TITLE Region-specific expression in early chick and mouse embryos of Ghox-lab and Hox 1.6, vertebrate homeobox-containing genes related to Drosophila labial JOURNAL Development 108 (1), 47-58 (1990) PUBMED 1693558 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000364.1. Transcript Variant: This variant (3) is intronless. The encoded protein is C-truncated relative to other avian orthologs. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript is intronless :: SRR13267654.266889.1 [ECO:0000345] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-3780 JAENSK010000364.1 799996-803775 FEATURES Location/Qualifiers source 1..3780 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="27" /map="27" gene 1..3780 /gene="HOXB1" /gene_synonym="Ghox-lab; HOXB-1" /note="homeobox B1" /db_xref="CGNC:10116" /db_xref="GeneID:395900" exon 1..3780 /gene="HOXB1" /gene_synonym="Ghox-lab; HOXB-1" /inference="alignment:Splign:2.1.0" misc_feature 1007..1009 /gene="HOXB1" /gene_synonym="Ghox-lab; HOXB-1" /note="upstream in-frame stop codon" CDS 1061..1825 /gene="HOXB1" /gene_synonym="Ghox-lab; HOXB-1" /note="isoform 2 is encoded by transcript variant 3; homeobox-containing transcription factor Hoxb-1; homeobox protein Hox-B1" /codon_start=1 /product="homeobox protein Hox-B1 isoform 2" /protein_id="NP_001384892.1" /db_xref="CGNC:10116" /db_xref="GeneID:395900" /translation="
MDNTRMNSFLEYAICNRGTGAYHHLEQSSPSFPSCSGSPSSDTFHGEGRYGAGGSAVAAAHLPPQSPGFFPAASGRSVPFAAAAPSAGYPTQNCSPGYGHHQLYLGQQDADGVYFQAAGYSSSTGPHLGSLAEGYCGAVGQYQQQQHLYGQEQPGYLPGVYGNLSPSLNEDKDPACPSEPCPNASAARTFDWMKVKRNPPKTGEFGALRARRGGGGGFPSGLRRRAGGGWSFCSPAMKCCLPSCFCSRSLGSFA"
ORIGIN
ctagaggaaagctcgaggctcccaacagactcagggaaaggtcaaagcaggttcggtgtaggaaagcagagcttgaagttgcagcccctaaacccatcggttacagcccttaaaaacgtctcgtgttctcagaagtggatgtgtaggcaggtaggtacccaggaggaagggtggataggaagattggtggggttagtaaggacacatatgtggtttttagttcctctcctccagttgctaagctgggcatggtgtctctccaacaaaaggcattctgtcttcctaactttatttcatcgcctcattagaatacagatttaattacgttgcttttacccacactggccctacacacaaagccggagtgagaaaattaaggcacgtagagtgaatttttcataggagttttagtccggaaagttccaaatatgttcaagccacctttcaagggaaagtttctcaacgaagaggagagcatccttttgtagttggggcggtggagggaggaagcagtcagacctccctacctctttttcccctgtctgcctttcagatgaaacgaagatcggagaaaaccttttttttaagttggggaaggggaaattctgctgaaattggctaaccacatcactcgggagcctttttagcacttaaaacagtcgtagatcattctaattcttcccccaatcccctcttccccatcacctccccgcaccccacctccctcctctcttttaaagtctttgaggaaagattttgacgtattcgtgttgttatcagattgatgggcagggtttgattgaaacccctttgtcatgtaaatgtcatctccgtgatggatgagctcagagatgtgacaaacttcaggagcccctcgctcattgggctgggggcggaccacgtggcccccccgcccccaccccggccccgccgaaggctccggggttcgagggccagcgatgcatggaaggaagttttacagctttgacatactatctaaaggttgtagggcaggcggaatcccccccaaaacaggctgaccctcctccatcagtggcagatggacaatactaggatgaactccttcttagagtatgcaatttgtaaccgtgggacgggcgcctaccaccatttagagcaaagctccccttccttcccctcttgctcaggtagcccctccagtgacacttttcatggagaagggcgctacggtgcggggggcagcgcggtcgcggccgcccatctccccccgcagagccccggcttcttccccgccgcctccgggcgctccgtgcccttcgcggccgctgccccgagcgccgggtacccaacccaaaattgcagccccggctacgggcaccaccagctctacctcggccagcaggacgcggacggcgtgtacttccaggcggccgggtactcctccagcaccggaccccacctcggctccctggcagagggctattgtggggccgtagggcagtaccagcagcagcagcacctttacgggcaggagcagcccggttacttgcccggggtttacggcaacctctcgccttccctaaatgaggacaaagaccccgcgtgtccctccgagccgtgccccaatgccagcgcggcgcggaccttcgattggatgaaagtgaagaggaaccctcccaagacaggtgagtttggggcgctcagggctcggcgggggggggggggggggttcccatccgggctgaggagaagggcgggcggggggtggtcgttctgcagccctgctatgaaatgttgccttcccagttgtttctgctcgaggtcattgggctcctttgcctgaggaagacgcatttttattcttatttttaagctctatagaaaaaccagctagcgatttttcgggcacacctggcagaggtccctgagctcgcttgccttcaggcccaatgcagttttaagcccagctcggaataggaaacactcccagtttcctgcttcctccacaaaggtggcttccacctctctcattgttcaacatccttctctaaaaccttcctgaaatccggaacttccctcctcccccaccatctccccccccccctcccttccactccttcccacgcacgttcaagtttcatggcacttcgcagggagctgggaggaccgtttgcaagagaaaggagcagctctgcagatcccggggcagcatttccctccgggttacgtccctggaaagtcaggggtggctcaggagaagctgcgagaggtgggggcccaacacgcagcagagggtaggcacgggggatgcccattcaatcagacagccccgggacccccaggcccagctaaagcactgcttctgccctgttgttttttgctccttacagccaaagtgtcggaatacgggctgctgggccagcccaacaccattcgcaccaacttcaccaccaagcagctgacggagctggagaaggagtttcactttaacaagtacctcacccgggcccggagggtggagatcgccgctacactggagctcaacgaaacccaagtcaagatctggttccagaacaggcggatgaaacagaagaagagggaaaaggaaggtctcgcccctcctgctgcctccaggtccgcgaaggaagcgagtgaagcctcggatcagtccaactgcacctcacctgaggcctcccccagctccgtgtcctcctgagccgcggttccgcggggcacaacgaccggatcggggctgccttcgagggccgctgctccccgccgctccccgcagcccgacccgcactgccccgcacagccccggccgcacacgcttccctccgagccgccccttcggctccggccgcctccacgcgtgcggtgcccattccccgtttgccttcctctcttaatttatagaccctccgtcaaacgttggactccaaaggagcggccgtgtcctcgtttatccttagcaataggcgtttgtctcagggacgtttctcccttctcccctcccccgataggaactgcactttcaactacagaaacttgaaaacgaatttagttctctcccgctttaaagatgtgcacaacgacttttgtccgcacgcaccctgagtttgctgtgttattcctcccctcgagacggctaaaacagaaaagtttggggtgctttttttttgtttcccttttacatttactctgtgtatctcggaaagagcccaaggcgctgaaggcctctgggaagacccgaaaaagaaaagaaacgaagcaaaaacgcaactcctctgctgccattttgcactatcgtcgctttacagggtttcctacacgctctccgcctgtattaccgatcctgggggtgggagcgttgtgctatcagataaaacgagataaggggaaggctgagcccggggtgctttgggcaacggtcattgccgcaccgagtgtgaacgtgcatgggacgaaggccgggggggtccgcactgcgctcccccaaccgcgatgcactgactgctatttattgtacgtctcgatagcctcacgtcttggggcgaagctgcacggctcctcgtatccccaccccctcaggcttatcggagtccgagaaaaacataattaaccacggccagttgctaccctttaccaccagaagctttagcgcagggcgaagtgaaaaccacggcgagtttcgttaaaggttgttttaaagagataaagggtcatcctgaaaagcctgtggtttcttaatcggaatctgttttccctctactcccttccctgtttttcgaaatgaaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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