LOCUS       NM_001396636            1741 bp    mRNA    linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus homeobox B6 (HOXB6), mRNA.
ACCESSION   NM_001396636 XM_015299441 XM_040691975
VERSION     NM_001396636.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1741)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr Biol 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX931212.2, BU270850.1 and JAENSK010000364.1.
            
            On or before Oct 25, 2021 this sequence version replaced
            XM_015299441.3, XM_040691975.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX931212.2, BX271059.4 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992323
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-893               BX931212.2         1-893
            894-1005            BU270850.1         178-289
            1006-1741           JAENSK010000364.1  736230-736965
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="27"
                     /map="27"
                     /breed="Leghorn"
     gene            1..1741
                     /gene="HOXB6"
                     /gene_synonym="GHOX-2.2"
                     /note="homeobox B6"
                     /db_xref="CGNC:59035"
                     /db_xref="GeneID:777548"
     exon            1..736
                     /gene="HOXB6"
                     /gene_synonym="GHOX-2.2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    259..261
                     /gene="HOXB6"
                     /gene_synonym="GHOX-2.2"
                     /note="upstream in-frame stop codon"
     CDS             328..996
                     /gene="HOXB6"
                     /gene_synonym="GHOX-2.2"
                     /note="homeobox protein Hox-B6-like; Homeobox protein
                     Hox-2.2"
                     /codon_start=1
                     /product="homeobox protein Hox-B6"
                     /protein_id="NP_001383565.1"
                     /db_xref="CGNC:59035"
                     /db_xref="GeneID:777548"
                     /translation="

MSSYFVNSTFPVSLAAGQEPFLGQIPLYPSGYADPLRHYPSTYGATGVQEKGYASSPYYQQSNGAYSRSSACDYGAGGFFREKDPACPPPNLDEVPFAPEPRKSDCAQSKTVFGESEEQKCSAPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHSLCLTERQIKIWFQNRRMKWKKENKLLSSSQLSAEEEEEKTAE"

     misc_feature    order(760..774,778..780,829..831,847..849,886..888,
                     892..897,904..909,913..921,925..930)
                     /gene="HOXB6"
                     /gene_synonym="GHOX-2.2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(766..768,775..777,895..897,904..909,916..918)
                     /gene="HOXB6"
                     /gene_synonym="GHOX-2.2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    769..927
                     /gene="HOXB6"
                     /gene_synonym="GHOX-2.2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            737..1741
                     /gene="HOXB6"
                     /gene_synonym="GHOX-2.2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cgggaacgcttctttccgcagatattatatatttggttaagggggtgcatttctgctgtttaaaagggagggaaaagggggtggatggtttgttcttggggtccctggtgcaatctcagctcctcatgggtgctattttgcaacctcaggcgcctgctattggtcagcccatgatcagatggttgtatttccttgtgtccctcgctggcaccacgccatctcccttcagctaaaacccaatctccgatatactactaatagctaaaccacttggactataaaacacaacaaatcataaagccgggaaaggacggcaggctccttccaatgagttcttattttgtcaactcgaccttcccggtgagtctggcggcggggcaggagcccttcctgggacagatcccgttatatccctcgggctatgcggatcctttgaggcactaccccagcacctatggagccacgggagtccaggagaagggctatgcctcctctccctactaccagcaaagcaacggagcctacagccgcagctccgcctgtgactatggggccggcggctttttcagggagaaggaccctgcgtgccccccccccaacctggacgaggtccccttcgcccccgagccgcgcaagtcggactgcgcgcagagcaaaactgtgttcggagagagcgaggagcaaaagtgttccgccccggtttacccctggatgcagcggatgaactcttgcaatagttcctccttcgggcccagcggccgcagaggccgtcagacgtacacccgttaccaaaccctggagctggagaaggaattccacttcaaccgctacctgacccggcgccggcggatcgagatcgcccactcgctctgtctgacggaacggcagatcaagatctggttccagaaccgtcggatgaagtggaaaaaagagaacaaactgctcagctcctcgcagctgagcgcggaggaggaggaggagaaaacggcggagtgaaaggagcgtttaaaaagaaaggagagagggagtgagtgggtgcgtgtgagagccaggaggatgagggtggtgtgggctggctgcgaggaagggaaaacgcgcacattggtgggacgagagctctgcggagacggcgacagcaacagaaaagtttgggccaccaatgccatggactcgtgttcccaatatctgtcgtgtccagaacaaaaaaatcaggcttctagttgcgttttttttttcttcctagacttccctccccatccaaccccccccccccctttccccccatcccctatggaataaaataataataataataaaaagtgaagagagagagagagagaagggagaaaagggaaaaagtgagagggaaagggaaaaaaaagacaaaaaaaaaaaaaaaaaaggactcctacccgtgtttctacccttggtgtcactgttagtaatctgctaactctgtatttaatggaagtgctgcaatatatgtcattcggggtgtttattgtcttaattttgtaaagaaatgtttcctgcacggtttacataggggtttttggttgggttttgggtttttttttctcctcaacttccccccctccacccccccttcctttggtaaattaatcaagccctgaggtctcgtaacgagtttatcttttatttttccttttatttttcttttctttttaaagaaaaacctactgaaagaacgagtactacctatagggatacaaaagcaaca

//