LOCUS       NM_001391909            1652 bp    mRNA    linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus VENT homeobox (VENTX), mRNA.
ACCESSION   NM_001391909 XM_015288825
VERSION     NM_001391909.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000232.1.
            
            On Dec 3, 2021 this sequence version replaced NM_001391909.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267651.29209.1, BU267895.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992559, SAMN02738215
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-476               JAENSK010000232.1  1535726-1536201     c
            477-715             JAENSK010000232.1  1535343-1535581     c
            716-1652            JAENSK010000232.1  1534051-1534987     c
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="6"
                     /map="6"
     gene            1..1652
                     /gene="VENTX"
                     /note="VENT homeobox"
                     /db_xref="CGNC:70296"
                     /db_xref="GeneID:107053700"
     exon            1..476
                     /gene="VENTX"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    140..142
                     /gene="VENTX"
                     /note="upstream in-frame stop codon"
     CDS             233..1093
                     /gene="VENTX"
                     /note="VENT homeobox homolog; homeobox protein vent1-like"
                     /codon_start=1
                     /product="homeobox protein VENTX"
                     /protein_id="NP_001378838.2"
                     /db_xref="CGNC:70296"
                     /db_xref="GeneID:107053700"
                     /translation="

MSQTDFPLAEPKSHGVRPHICCVPPPRAPSSQGRGRNPLLARAETRRGSPRTEQPSACEPRAERQSGSSPQEPSEQSSSEPAPDGGWLSADESSGYESESAGGERSEAEAPCGSRGRQRRARTAFSSEQVCRLEKTFQRQKYLGASERRKLAAALQLSEVQIKTWFQNRRMKLKRQIQDQQHSLVSPAPLYSFPPGTTPPALLPDEGFPLSFHYPFAPQHQRLLPLPPVSAVQLSFSFPRYDALQSTYRFMANELPYYHQHLLPPHPSFHPVIKNKMDNKCHPVYA"

     misc_feature    order(587..601,605..607,656..658,674..676,713..715,
                     719..724,731..736,740..748,752..757)
                     /gene="VENTX"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(593..595,602..604,722..724,731..736,743..745)
                     /gene="VENTX"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    596..754
                     /gene="VENTX"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            477..715
                     /gene="VENTX"
                     /inference="alignment:Splign:2.1.0"
     exon            716..1652
                     /gene="VENTX"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggggataggggcaggtttgcacttcaagggggtttccccggccgcgcagacacgcaggagccagggccttgtagacatttgccagacgtgtgaactttcttcctcactggtagctgttatctctgctcgattcccactttgatgtggcttcacacttgcaaacgagccctctccggactggagcgcctgtataagagctgatcgaggccggcagccccagcccctcaccgccatgagccagaccgactttcccctggcagagcccaaatcccatggggtgcggccccacatctgctgcgttccccctccccgcgccccctcctcgcagggccgcggccgcaatcccctcctggccagggccgagacccgacgggggagtccgcggacggaacagccctcggcttgcgagccccgcgcggagcggcagagcgggagcagtccccaggagcccagcgagcagtcttcgtcggagccagcccctgacggcggctggctgagcgccgacgagtcctcgggctacgagagcgagagcgctggcggggagcgctcggaagcggaggcgccgtgtgggagccgcgggcggcagcggcgggcgcggaccgccttcagctcggagcaggtgtgccggctggagaagacctttcagcgccagaagtacctgggagcctcggagcgaaggaagctggcggccgccctgcagctctcggaggtccagatcaagacctggtttcagaacaggaggatgaaactgaagagacaaatccaggaccaacagcacagcctcgtgtctcctgctccgctctacagcttccccccgggaaccacccctccggccctccttcccgatgaaggctttccgttgtccttccactatccctttgctccacagcatcagagactcctgcctcttcccccggtgtctgcggtgcagctcagcttttccttccccagatacgatgctttgcaaagcacctaccgcttcatggcaaacgagttgccgtactaccatcaacatttgcttcctcctcatccctctttccatccagtaattaagaataaaatggacaataaatgccatcctgtgtatgcctgatagtgaaaacaaaacatggcagacaaaggggaaaaaatgagtggcataatgtattattttccactcagatggatttttttgtctgatttgtaatcttatatgtttatttttataagttaagtgtaaagagtaataacttaatattggtactaactagcattaaaatttattggatgtggtgcctctcgttcttctttacgtctcacctttttgaaaagctttctttttttttttccccaaatatcttcctttgatttctacatgtgctgaagataccttaagcacatttgaaatgtgtgatcatgctatagctatgatgcacttacagtttgtgcctacagcctttatttttgcctgcagctgctgaaaaggaactaaaggaagaaaagccaagagcagaaacttgcatttgcaagatttccaatggcgtaggacaaaattaagttttgcttggactgggaattgtacatctccagttttcatatgtatataaattgatgggtgttacctgtgcaaagtgtgcagaggtttcacttgtgatctgctctttggataatgg

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