2024-09-08 10:19:48, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001334482 1187 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana homeobox-leucine zipper protein 18 (HB18), mRNA. ACCESSION NM_001334482 VERSION NM_001334482.1 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1187) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1187) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1187) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1187) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1187) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). FEATURES Location/Qualifiers source 1..1187 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1187 /gene="HB18" /locus_tag="AT1G70920" /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper protein 18" /db_xref="Araport:AT1G70920" /db_xref="GeneID:843431" /db_xref="TAIR:AT1G70920" CDS 411..941 /gene="HB18" /locus_tag="AT1G70920" /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper protein 18" /codon_start=1 /product="homeobox-leucine zipper protein 18" /protein_id="NP_001321391.1" /db_xref="Araport:AT1G70920" /db_xref="GeneID:843431" /db_xref="TAIR:AT1G70920" /translation="
MRDFDINQTPKTEEDREWMIGATPHVNEDDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALKPSSTSALTMCPRCERVTDAVDNDSNAVQEGAVLSSRSRMTISSSSSLC"
misc_feature 516..686 /gene="HB18" /locus_tag="AT1G70920" /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper protein 18" /note="Homeodomain; Region: HOX; smart00389" /db_xref="CDD:197696" misc_feature order(519..533,537..539,588..590,606..608,645..647, 651..656,663..668,672..680,684..689) /gene="HB18" /locus_tag="AT1G70920" /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper protein 18" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(525..527,534..536,654..656,663..668,675..677) /gene="HB18" /locus_tag="AT1G70920" /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper protein 18" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 690..821 /gene="HB18" /locus_tag="AT1G70920" /gene_synonym="ATHB18; F15H11.30; homeobox-leucine zipper protein 18" /note="homeobox associated leucin zipper; Region: HALZ; smart00340" /db_xref="CDD:128634" ORIGIN
atttctcttatgcttaattccttattccatattccacattccacgcttatcacaaaatctttctcctttgtctcgcttttttcttttgttctttcacatgtgtatatacacacagaacacacacttacatttctattatcatataaaacttcaactttaccttttatcttccaaaaaaaacactatcttcttcatcaaattctcttgattctgtttctttttatcctcctccatggccctctcacctaattcaagctctttagatttaacaatctcaattccgagcttctctccatctccttcacttggtaagatcatatccaaattaaagatttattaaatcttatatattatatagttttaatactatgtcttccaattaaaataatttggtaggtgatcatcacgggatgagagattttgacataaaccaaacaccaaagacggaagaagatcgtgagtggatgatcggtgcaacaccacatgtcaacgaagatgatagcaactcgggtggccggcggcgcaaaaagctccgtctaacgaaagaacaatcacatcttcttgaagagagtttcatacaaaaccataccttaacccctaagcaaaaaaaagatttggccacctttttgaagcttagtcaaaggcaagttgaggtgtggtttcaaaatcgaagagctcggagtaagctaaagcacacggaaatggaatgtgagtatctaaaaagatggttcggatcgttgaaggaacaaaatcgacggctacaaatagaagttgaagaactacgagcgctaaagccatcatcgacctcggctttaaccatgtgtcctcggtgtgaacgtgtgactgatgcagtagataatgactctaatgccgttcaagagggggcagttcttagcagccggtcacggatgacaatttcctcttcctcttccctctgttgactggtttggtcgaagtcaaaagtcaaaagataaacgcctgtttcggggtaaaaagcaaagatttgatgatgattaggaggattttgtgtatagtttgctaattatttattacaaatttacaaaccagtgaggaaaaaagataatttaattctcgatctttaattagctttttgtgttatttattcataattttatttttcgtgtttaaccaaaaaatagacaaaacaaatattgcttttcgtgtcc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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