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2024-03-29 17:03:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001329289            1222 bp    mRNA    linear   VRT 19-FEB-2023
DEFINITION  Ictalurus punctatus claudin 11a (cldn11a), mRNA.
ACCESSION   NM_001329289 XM_017491751
VERSION     NM_001329289.1
KEYWORDS    RefSeq.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 1222)
  AUTHORS   Sun L, Liu S, Bao L, Li Y, Feng J and Liu Z.
  TITLE     Claudin multigene family in channel catfish and their expression
            profiles in response to bacterial infection and hypoxia as revealed
            by meta-analysis of RNA-Seq datasets
  JOURNAL   Comp Biochem Physiol Part D Genomics Proteomics 13, 60-69 (2015)
   PUBMED   25681604
REFERENCE   2  (bases 1 to 1222)
  AUTHORS   Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang
            Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E and
            Liu Z.
  TITLE     Efficient assembly and annotation of the transcriptome of catfish
            by RNA-Seq analysis of a doubled haploid homozygote
  JOURNAL   BMC Genomics 13, 595 (2012)
   PUBMED   23127152
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from KM870807.1.
            
            On Jul 8, 2016 this sequence version replaced XM_017491751.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KM870807.1, GEHJ01153256.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00739092, SAMN00774075
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /chromosome="17"
                     /map="17"
     gene            1..1222
                     /gene="cldn11a"
                     /gene_synonym="CLDN11c"
                     /note="claudin 11a"
                     /db_xref="GeneID:108278399"
     exon            1..645
                     /gene="cldn11a"
                     /gene_synonym="CLDN11c"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    405..407
                     /gene="cldn11a"
                     /gene_synonym="CLDN11c"
                     /note="upstream in-frame stop codon"
     CDS             420..1073
                     /gene="cldn11a"
                     /gene_synonym="CLDN11c"
                     /note="claudin 11c"
                     /codon_start=1
                     /product="claudin-11a"
                     /protein_id="NP_001316218.1"
                     /db_xref="GeneID:108278399"
                     /translation="
MASACLQLSGFFLSVLGWICVIISTSTSDWVILCKYSMNTCRKMDELETKGLWEQCVISTALYHCYSLNQILELPVYIQTCRALMISACILGLPAAALLLSSMPCIHLGEDSVNDKNKRSVIGGILMLIVAMFSVVSTVWFPVGAHQELRLMSFGFSLYSGWVGGALSLLGGCILTCCSIDSTPSYHQNNRYSYYSKQNPPTNQTPPTSNHAKTAQV"
     misc_feature    435..944
                     /gene="cldn11a"
                     /gene_synonym="CLDN11c"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     exon            646..810
                     /gene="cldn11a"
                     /gene_synonym="CLDN11c"
                     /inference="alignment:Splign:2.1.0"
     exon            811..1222
                     /gene="cldn11a"
                     /gene_synonym="CLDN11c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
aactcttcatctgaaccgtccggctcacctaaactcaagatttcaccaacaacagcaaaatattattttcatttacgcagcactttttattttattattatttttgaaagaattctttgtacaaaattaagtaaagtttaatttaaacttttcttgtttgagtttttttttttttatccaaagaaaagagaagtactttttttttttttaccttattgttatatatactttacattttttaattggtttatttttttgttacttaaataattactaacggacggtattattttatctatttgttgttttatattttgttgtttgatttgattattttcgatgcaaaactgagtcagatttttattatatatattttattattatttaacttcattcccacacactaacaacgagtggtgatggcgagcgcatgcctgcagctgagcggttttttcctgagtgttttggggtggatctgtgtgatcatctccacctccaccagtgactgggtgatcctctgtaaatacagcatgaacacgtgcaggaagatggacgagctcgagactaaaggcctgtgggagcagtgtgtgatttccaccgcactttaccactgttactccctcaaccagatcctcgagctgcctgtgtacatccagacatgccgtgcattgatgatctccgcatgtatccttggtttacctgccgcagcactcctgctctcctctatgccgtgcatccatcttggagaggattcggtgaacgacaagaacaaacgctcagtcatcggaggaattctgatgctcatagtggcaatgttcagtgtggtgtccaccgtctggttcccggttggagctcatcaggaactcaggttgatgtcgtttgggttttctctgtactccggctgggtgggcggggctttgtctctcctggggggctgcatcctcacctgctgctccattgactccaccccctcataccaccaaaataaccgttactcttactactctaaacagaacccacccaccaaccagactccgcccaccagcaaccacgccaagactgcacaagtctgatgtttctacggtgctacccactgtttctctctctctctctctctctctcaattgtaaatagatttttgtgttcagtttttgatgatgtaagctaattatatccaacattaacatccagttttgttaaacacggacttatactaaagaga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]