2024-03-30 00:28:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001324783 1064 bp mRNA linear PLN 17-APR-2022 DEFINITION Capsicum annuum homeobox-leucine zipper protein HAT22 (LOC107860150), mRNA. ACCESSION NM_001324783 XM_016705410 VERSION NM_001324783.1 KEYWORDS RefSeq. SOURCE Capsicum annuum ORGANISM Capsicum annuum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU998972.1. On May 13, 2016 this sequence version replaced XM_016705410.1. ##Evidence-Data-START## Transcript exon combination :: EU998972.1, JW058719.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN19291615, SAMN19291619 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1064 /organism="Capsicum annuum" /mol_type="mRNA" /db_xref="taxon:4072" /chromosome="2" /map="2" gene 1..1064 /gene="LOC107860150" /gene_synonym="HB1" /note="homeobox-leucine zipper protein HAT22" /db_xref="GeneID:107860150" CDS 1..819 /gene="LOC107860150" /gene_synonym="HB1" /note="homeodomain leucine-zipper 1" /codon_start=1 /product="homeobox-leucine zipper protein HAT22" /protein_id="NP_001311712.1" /db_xref="GeneID:107860150" /translation="
MGFDDICNTGLVLGLGFSSTTDQKSTKITPLASKGPASLTFEPSLTLSLISGDRTYEQQATKKVNVTKPSNDHQSADLYRQDSAASSYSNASVKRERDVGSEETTTEVERVSSRVISDEDDDGSNARKKLRLTKAQSALLEESFKLHSTLNPKQKQDLAMELSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLHKELQELKALKIAQPLYMQLPAATLTMCPSCERIGGGVGENPSKNPFTIAQKPHFYSPFNNPSAAC"
misc_feature order(379..390,394..396,445..447,463..465,502..504, 508..513,520..525,529..537,541..546) /gene="LOC107860150" /gene_synonym="HB1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(382..384,391..393,511..513,520..525,532..534) /gene="LOC107860150" /gene_synonym="HB1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 391..543 /gene="LOC107860150" /gene_synonym="HB1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 547..678 /gene="LOC107860150" /gene_synonym="HB1" /note="homeobox associated leucin zipper; Region: HALZ; smart00340" /db_xref="CDD:128634" ORIGIN
atgggttttgatgatatttgcaacactggcctggttctaggattaggcttttcctcaacaaccgatcaaaaatcaacaaaaataacaccactagcaagcaaaggaccagcatctcttacgtttgaaccttcactaactctaagcctaatttctggtgatcgtacctatgagcaacaagctacaaagaaggttaacgttacgaagccatcgaacgatcatcaatcggctgatttgtacagacaagatagtgctgcttcttcctattcaaatgctagtgtgaaaagggagagagatgttggtagtgaagagacaactacagaggtagaaagagtttcctccagagttattagcgatgaagatgatgatggctctaacgctaggaagaaacttaggctcactaaagcacaatccgcccttttagaggaaagcttcaagctacacagcactctcaatcctaagcaaaaacaggatttagccatggaacttagtctaaggcctcgccaagttgaagtttggttccagaacagaagagccagaacaaagctgaagcaaacagaggtagactgtgaattcctgaaaaaatgctgtgagacactgacagaagaaaacaggaggcttcacaaagagctacaagaactaaaggcactaaaaatagcacaacctttgtacatgcaattgccggcggcaaccttaactatgtgtccttcatgcgaaaggatcggcggcggtgtcggagaaaatccatcgaaaaatccttttactattgctcagaagcctcacttctacagtccatttaataatccatcagcagcttgttaattagaagtcatatatatatgaatatcagtagtattatgttttagacaaatctgccaaacccgccactttttttggttaagggcttgtatggaaaaaatcaaaatgactagtgcagttgtatgtgtagaattagaattaaggtcactaatcaatctttttttatttgtttctttatggtccatattataagtctgtaaatcagaaggaaatatatatatatatatatacatatatggatgggtttt
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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