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2024-03-30 00:28:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001324783            1064 bp    mRNA    linear   PLN 17-APR-2022
DEFINITION  Capsicum annuum homeobox-leucine zipper protein HAT22
            (LOC107860150), mRNA.
ACCESSION   NM_001324783 XM_016705410
VERSION     NM_001324783.1
KEYWORDS    RefSeq.
SOURCE      Capsicum annuum
  ORGANISM  Capsicum annuum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
            Solanoideae; Capsiceae; Capsicum.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU998972.1.
            
            On May 13, 2016 this sequence version replaced XM_016705410.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU998972.1, JW058719.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN19291615, SAMN19291619
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Capsicum annuum"
                     /mol_type="mRNA"
                     /db_xref="taxon:4072"
                     /chromosome="2"
                     /map="2"
     gene            1..1064
                     /gene="LOC107860150"
                     /gene_synonym="HB1"
                     /note="homeobox-leucine zipper protein HAT22"
                     /db_xref="GeneID:107860150"
     CDS             1..819
                     /gene="LOC107860150"
                     /gene_synonym="HB1"
                     /note="homeodomain leucine-zipper 1"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HAT22"
                     /protein_id="NP_001311712.1"
                     /db_xref="GeneID:107860150"
                     /translation="
MGFDDICNTGLVLGLGFSSTTDQKSTKITPLASKGPASLTFEPSLTLSLISGDRTYEQQATKKVNVTKPSNDHQSADLYRQDSAASSYSNASVKRERDVGSEETTTEVERVSSRVISDEDDDGSNARKKLRLTKAQSALLEESFKLHSTLNPKQKQDLAMELSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLHKELQELKALKIAQPLYMQLPAATLTMCPSCERIGGGVGENPSKNPFTIAQKPHFYSPFNNPSAAC"
     misc_feature    order(379..390,394..396,445..447,463..465,502..504,
                     508..513,520..525,529..537,541..546)
                     /gene="LOC107860150"
                     /gene_synonym="HB1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(382..384,391..393,511..513,520..525,532..534)
                     /gene="LOC107860150"
                     /gene_synonym="HB1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    391..543
                     /gene="LOC107860150"
                     /gene_synonym="HB1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    547..678
                     /gene="LOC107860150"
                     /gene_synonym="HB1"
                     /note="homeobox associated leucin zipper; Region: HALZ;
                     smart00340"
                     /db_xref="CDD:128634"
ORIGIN      
atgggttttgatgatatttgcaacactggcctggttctaggattaggcttttcctcaacaaccgatcaaaaatcaacaaaaataacaccactagcaagcaaaggaccagcatctcttacgtttgaaccttcactaactctaagcctaatttctggtgatcgtacctatgagcaacaagctacaaagaaggttaacgttacgaagccatcgaacgatcatcaatcggctgatttgtacagacaagatagtgctgcttcttcctattcaaatgctagtgtgaaaagggagagagatgttggtagtgaagagacaactacagaggtagaaagagtttcctccagagttattagcgatgaagatgatgatggctctaacgctaggaagaaacttaggctcactaaagcacaatccgcccttttagaggaaagcttcaagctacacagcactctcaatcctaagcaaaaacaggatttagccatggaacttagtctaaggcctcgccaagttgaagtttggttccagaacagaagagccagaacaaagctgaagcaaacagaggtagactgtgaattcctgaaaaaatgctgtgagacactgacagaagaaaacaggaggcttcacaaagagctacaagaactaaaggcactaaaaatagcacaacctttgtacatgcaattgccggcggcaaccttaactatgtgtccttcatgcgaaaggatcggcggcggtgtcggagaaaatccatcgaaaaatccttttactattgctcagaagcctcacttctacagtccatttaataatccatcagcagcttgttaattagaagtcatatatatatgaatatcagtagtattatgttttagacaaatctgccaaacccgccactttttttggttaagggcttgtatggaaaaaatcaaaatgactagtgcagttgtatgtgtagaattagaattaaggtcactaatcaatctttttttatttgtttctttatggtccatattataagtctgtaaatcagaaggaaatatatatatatatatatacatatatggatgggtttt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]