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2019-03-25 08:19:03, GGRNA.v2 : RefSeq release 92 (Jan, 2019)

LOCUS       NM_001318419            1191 bp    mRNA    linear   VRT 24-SEP-2018
DEFINITION  Gallus gallus homeobox A5 (HOXA5), mRNA.
ACCESSION   NM_001318419 XM_003640699
VERSION     NM_001318419.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Chen JW, Zahid S, Shilts MH, Weaver SJ, Leskowitz RM, Habbsa S,
            Aronowitz D, Rokins KP, Chang Y, Pinnella Z, Holloway L and
            Mansfield JH.
  TITLE     Hoxa-5 acts in segmented somites to regulate cervical vertebral
            morphology
  JOURNAL   Mech. Dev. 130 (4-5), 226-240 (2013)
   PUBMED   23462683
  REMARK    GeneRIF: The role of Hoxa-5 in after somite segmentation in chick,
            was investigated.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY686640.1.
            On Jan 6, 2016 this sequence version replaced XM_003640699.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY686640.1, BU474805.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
     gene            1..1191
                     /gene="HOXA5"
                     /gene_synonym="HOX1.3; HOX1C"
                     /note="homeobox A5"
                     /db_xref="CGNC:66000"
                     /db_xref="GeneID:100858404"
     exon            1..604
                     /gene="HOXA5"
                     /gene_synonym="HOX1.3; HOX1C"
                     /inference="alignment:Splign:2.1.0"
     CDS             43..855
                     /gene="HOXA5"
                     /gene_synonym="HOX1.3; HOX1C"
                     /note="homeo box 1C; homeo box A5; homeobox protein HOXA5;
                     homeobox protein Hox-1C"
                     /codon_start=1
                     /product="homeobox protein Hox-A5"
                     /protein_id="NP_001305348.1"
                     /db_xref="CGNC:66000"
                     /db_xref="GeneID:100858404"
                     /translation="
MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQYRDSASMHSGRYGYGYNGMDLSVGRSASTHFGASERARTYPANSTSASTEPRYSQSAAASHSPPPDPLPCTAVAASPVSESHHGVKNSLGNSSSTSSNSSSSTHISRDGVGTSSGTEEDTPASSEQASAPSDQSTAQPSQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP"
     misc_feature    502..>822
                     /gene="HOXA5"
                     /gene_synonym="HOX1.3; HOX1C"
                     /note="Homeobox protein; Region: Abdominal-A; cl27820"
                     /db_xref="CDD:332641"
     misc_feature    568..585
                     /gene="HOXA5"
                     /gene_synonym="HOX1.3; HOX1C"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6B3N0.1);
                     Region: Antp-type hexapeptide"
     misc_feature    625..804
                     /gene="HOXA5"
                     /gene_synonym="HOX1.3; HOX1C"
                     /note="Region: homeobox"
     misc_feature    order(628..642,646..648,697..699,715..717,754..756,
                     760..765,772..777,781..789,793..798)
                     /gene="HOXA5"
                     /gene_synonym="HOX1.3; HOX1C"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(634..636,643..645,763..765,772..777,784..786)
                     /gene="HOXA5"
                     /gene_synonym="HOX1.3; HOX1C"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    637..795
                     /gene="HOXA5"
                     /gene_synonym="HOX1.3; HOX1C"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:306543"
     exon            605..1176
                     /gene="HOXA5"
                     /gene_synonym="HOX1.3; HOX1C"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
acgaccaagagccacaaatcaagcacacatatcaaaaaacaaatgagctcttattttgtaaactcattttgcggtcgctatccaaatggcccggactaccagttacataattatggagatcacagctcggtgagcgagcaatacagggactccgccagcatgcactccggcaggtacggatacggctacaatggcatggacctcagcgtcgggcgctccgcttccacccactttggtgccagcgagagagcccgcacctacccggccaacagcacctctgcctcgacagagcccaggtacagccagtccgcggccgcttcccactcgcctccccccgatcccctgccctgcaccgccgtggccgcttcgcccgtcagcgagagtcaccacggggtgaaaaactccctgggcaactccagcagcacttcgtccaattccagcagcagcacgcacatcagcagggacggggttggcacctcgtccggcaccgaggaagacactccggcgagcagcgagcaggcaagtgccccgagcgaccaaagcacagcacagccttcccagccccagatctacccttggatgcgaaagctgcacataagtcatgacaacatagggggaccagaagggaaaagggctcggactgcttacacccggtatcagaccttggagctggaaaaggaatttcacttcaatagatacctgacccgcagaagaaggattgaaatagcacacgctctttgcctctcagagagacaaataaagatctggttccaaaacaggagaatgaaatggaaaaaggataataagctgaaaagtatgagcatggcagctgcagggggggcattccgtccctaagcgtttgatcaattaaaagtactgagcagtattagctgaccctgcgtctcatgtcagtactaagttgactttctaaaacttccttgtgttacttctgtgaagaaaccctgttcttgtcgcccttattcatcttttaatcatgagcctgtttattaccattctctcgcgtgtataagtagatctgcttttatcgtacatttctttgtcttgaatggctttgtcttgaaaaaaaataatagatgttttaacttatttatatgaagcgagctgtgttacttgaagtaactgttaaaaaaaaaagaagcaaaaggaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]