2024-04-19 11:30:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001315961 693 bp mRNA linear PLN 23-JUN-2022 DEFINITION Brassica napus homeobox-leucine zipper protein ATHB-12-like (LOC106345588), mRNA. ACCESSION NM_001315961 VERSION NM_001315961.1 KEYWORDS RefSeq. SOURCE Brassica napus (rape) ORGANISM Brassica napus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from KT000602.1. ##Evidence-Data-START## Transcript exon combination :: KT000602.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..693 /organism="Brassica napus" /mol_type="mRNA" /db_xref="taxon:3708" /chromosome="A9" /map="A9" gene 1..693 /gene="LOC106345588" /gene_synonym="ATHB-12" /note="homeobox-leucine zipper protein ATHB-12-like" /db_xref="GeneID:106345588" CDS 1..693 /gene="LOC106345588" /gene_synonym="ATHB-12" /codon_start=1 /product="Homeobox-leucine zipper protein ATHB-12-like" /protein_id="NP_001302890.1" /db_xref="GeneID:106345588" /translation="
MEEGDVFNCCFSEINSGMSMNKNKKKMKKSNNQKRFSEEQIKSLEVIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNILRANYNHLASQFDIMKKEKQALVSELQRLNEEMHKSKEERREECCGEQRVALSSTTRSENGKCEPEVRINQGIALCNDDIKTEYFGFEESNHELMNIVEQAGDSCLTSSDNWGGFNSDSILDQSSSNYPWWDFWS"
misc_feature order(97..102,106..108,157..159,175..177,214..216, 220..225,232..237,241..249,253..258) /gene="LOC106345588" /gene_synonym="ATHB-12" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 103..255 /gene="LOC106345588" /gene_synonym="ATHB-12" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(103..105,223..225,232..237,244..246) /gene="LOC106345588" /gene_synonym="ATHB-12" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 259..384 /gene="LOC106345588" /gene_synonym="ATHB-12" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:426641" exon 1..360 /gene="LOC106345588" /gene_synonym="ATHB-12" /inference="alignment:Splign:2.1.0" exon 361..693 /gene="LOC106345588" /gene_synonym="ATHB-12" /inference="alignment:Splign:2.1.0" ORIGIN
atggaagaaggagacgttttcaattgctgcttcagcgaaattaatagtggcatgtccatgaataagaacaagaagaagatgaagaagagcaataatcagaagaggtttagtgaggaacagatcaagtcacttgaggttatattcgagtccgagacgaggcttgagccgagaaagaaggtgcaggtagctcgagaactagggctgcaaccaagacaagtggctatatggtttcagaacaagagagctcgttggaagactaagcagcttgagaaagagtataacattctcagagccaactacaatcatttggcatcacaatttgacatcatgaagaaagaaaagcaagctctggtctccgagttgcagagactaaatgaagagatgcataagtcaaaagaagaaagacgtgaagagtgttgtggtgaacaaagagtggctcttagcagtaccacaaggtcagaaaatggaaagtgtgagccagaagttaggataaatcaagggattgctctgtgtaatgatgacattaagacagagtattttggatttgaggagtctaatcatgagctcatgaacattgtggagcaagctggtgatagttgcttgacttcatctgataactggggaggcttcaactctgattctatcttagaccaatctagcagcaattacccttggtgggacttttggtcatga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]