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2024-04-19 11:30:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001315961             693 bp    mRNA    linear   PLN 23-JUN-2022
DEFINITION  Brassica napus homeobox-leucine zipper protein ATHB-12-like
            (LOC106345588), mRNA.
ACCESSION   NM_001315961
VERSION     NM_001315961.1
KEYWORDS    RefSeq.
SOURCE      Brassica napus (rape)
  ORGANISM  Brassica napus
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Brassiceae; Brassica.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from KT000602.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KT000602.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Brassica napus"
                     /mol_type="mRNA"
                     /db_xref="taxon:3708"
                     /chromosome="A9"
                     /map="A9"
     gene            1..693
                     /gene="LOC106345588"
                     /gene_synonym="ATHB-12"
                     /note="homeobox-leucine zipper protein ATHB-12-like"
                     /db_xref="GeneID:106345588"
     CDS             1..693
                     /gene="LOC106345588"
                     /gene_synonym="ATHB-12"
                     /codon_start=1
                     /product="Homeobox-leucine zipper protein ATHB-12-like"
                     /protein_id="NP_001302890.1"
                     /db_xref="GeneID:106345588"
                     /translation="
MEEGDVFNCCFSEINSGMSMNKNKKKMKKSNNQKRFSEEQIKSLEVIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNILRANYNHLASQFDIMKKEKQALVSELQRLNEEMHKSKEERREECCGEQRVALSSTTRSENGKCEPEVRINQGIALCNDDIKTEYFGFEESNHELMNIVEQAGDSCLTSSDNWGGFNSDSILDQSSSNYPWWDFWS"
     misc_feature    order(97..102,106..108,157..159,175..177,214..216,
                     220..225,232..237,241..249,253..258)
                     /gene="LOC106345588"
                     /gene_synonym="ATHB-12"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    103..255
                     /gene="LOC106345588"
                     /gene_synonym="ATHB-12"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(103..105,223..225,232..237,244..246)
                     /gene="LOC106345588"
                     /gene_synonym="ATHB-12"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    259..384
                     /gene="LOC106345588"
                     /gene_synonym="ATHB-12"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     exon            1..360
                     /gene="LOC106345588"
                     /gene_synonym="ATHB-12"
                     /inference="alignment:Splign:2.1.0"
     exon            361..693
                     /gene="LOC106345588"
                     /gene_synonym="ATHB-12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atggaagaaggagacgttttcaattgctgcttcagcgaaattaatagtggcatgtccatgaataagaacaagaagaagatgaagaagagcaataatcagaagaggtttagtgaggaacagatcaagtcacttgaggttatattcgagtccgagacgaggcttgagccgagaaagaaggtgcaggtagctcgagaactagggctgcaaccaagacaagtggctatatggtttcagaacaagagagctcgttggaagactaagcagcttgagaaagagtataacattctcagagccaactacaatcatttggcatcacaatttgacatcatgaagaaagaaaagcaagctctggtctccgagttgcagagactaaatgaagagatgcataagtcaaaagaagaaagacgtgaagagtgttgtggtgaacaaagagtggctcttagcagtaccacaaggtcagaaaatggaaagtgtgagccagaagttaggataaatcaagggattgctctgtgtaatgatgacattaagacagagtattttggatttgaggagtctaatcatgagctcatgaacattgtggagcaagctggtgatagttgcttgacttcatctgataactggggaggcttcaactctgattctatcttagaccaatctagcagcaattacccttggtgggacttttggtcatga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]