LOCUS       NM_001311171            1757 bp    mRNA    linear   PLN 23-JUN-2021
DEFINITION  Malus domestica homeobox protein knotted-1-like 1 (KNAP1), mRNA.
ACCESSION   NM_001311171 XM_008349368
VERSION     NM_001311171.1
KEYWORDS    RefSeq.
SOURCE      Malus domestica (apple)
  ORGANISM  Malus domestica
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae;
            Maleae; Malus.
REFERENCE   1  (bases 1 to 1757)
  AUTHORS   Watillon B, Kettmann R, Boxus P and Burny A.
  TITLE     Knotted1-like homeobox genes are expressed during apple tree (Malus
            domestica [L.] Borkh) growth and development
  JOURNAL   Plant Mol Biol 33 (4), 757-763 (1997)
   PUBMED   9132068
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from Z71978.1.
            
            On Jul 28, 2015 this sequence version replaced XM_008349368.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: Z71978.1, HM122568.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00051333, SAMD00051334
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1757              Z71978.1           2-1758
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Malus domestica"
                     /mol_type="mRNA"
                     /db_xref="taxon:3750"
                     /chromosome="8"
                     /map="8"
     gene            1..1757
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /note="homeobox protein knotted-1-like 1"
                     /db_xref="GeneID:103410692"
     exon            1..856
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    377..379
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /note="upstream in-frame stop codon"
     CDS             392..1588
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /note="kn1-like protein; HD domain class transcription
                     factor"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 1"
                     /protein_id="NP_001298100.1"
                     /db_xref="GeneID:103410692"
                     /translation="

MEDYNNQMDHESSGGRGNFLYASPNLGGNYGRAASDHQMGINTFHLQSSGGGGGGGSGDQCNFQSPGTHPINVKTEATTSQHGHPKFQYNNNNNNHHLVSSSRGHQPVVHQLQHNLDLQNDDHSLSSNEVEAIKAKIIAHPQYSNLVEAYMDCQRVGAPSDVVPRLSVARQEFEARQRSSGTSRETSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLGNNNNAPPLRIFSPSEDKCEGIGSSEDEQENSGGETEVPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNAALYMDGHYTGDVHYRLGP"

     misc_feature    518..598
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /note="propagated from UniProtKB/Swiss-Prot (O04134.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    785..904
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:427505"
     misc_feature    905..967
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /note="propagated from UniProtKB/Swiss-Prot (O04134.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    944..1084
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    1091..1222
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /note="propagated from UniProtKB/Swiss-Prot (O04134.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1229..1294
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    1352..1468
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            857..979
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /inference="alignment:Splign:2.1.0"
     exon            980..1130
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /inference="alignment:Splign:2.1.0"
     exon            1131..1384
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /inference="alignment:Splign:2.1.0"
     exon            1385..1757
                     /gene="KNAP1"
                     /gene_synonym="HD10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtctctttcaccctcgcacaacacagtgccgcgagttgccggttccggccacgccatctcctcctctcagtacttcaaaacaatcaattatgacatgtattattctgtaacgaaattataacatgcttaattccttgtttggcttcacttcctcgcctccataatcccatggattgccaataaatatattagttcccatttccctactcaactccctaaccttttggcttacaaaaaactctggtcgtcgtggtttgtgttcccagtactcataaaattattccttcctgtgttcacaagctaggtttcggtctcttcctctgtaaccctttactactagggttttagttgatttataaattagaaacctttttgttgagagagaaataaaatggaagactacaacaatcaaatggatcatgagagttcaggtggtcggggaaacttcctctacgcctcaccaaaccttggaggaaattatgggagagctgcaagtgatcatcagatgggaatcaacacctttcatcttcaatcaagcggcggtggaggcggcggcggcagcggcgatcagtgtaattttcagtctccaggaacacacccaattaatgtgaagaccgaagccaccacatcacaacatggccacccaaaatttcagtacaacaataacaataataatcatcatcttgtttcttcatcaagagggcaccaaccagttgttcatcagctacagcataatttggatcttcaaaacgatgatcatagcctgagctccaacgaagttgaagccatcaaagccaagatcatcgcccaccctcagtactctaacctcgtggaagcttacatggattgccaaagggtgggagctccatctgatgttgtgcctcgactctcagttgccagacaggagtttgaggcacgacagcgatcttcaggaacttcaagagaaacttcaaaagacccagaactcgatcagttcatggaagcatactacgatatgctggtgaaatatcgtgaagaactaacaaggccaatacaagaagccatggatttcatgagaaggattgaaactcagcttaacatgcttggaaataataataatgctcctcctcttcgaatcttctcaccctctgaggacaagtgtgaaggaattggttcatctgaagacgagcaggagaatagtggtggagaaactgaagttcctgagattgatccaagagctgaagacagagagctcaagaatcacctgctgagaaagtatagtggttacttaagtagcctgaagcaagagctttccaagaaaaagaagaaagggaaattgcccaaagaagccaggcagaagctcctgagttggtgggagctacattacaagtggccatatccttcggaatcggagaaggtggcattggcggagtctaccggtttggatcagaaacaaataaacaattggttcataaatcaaaggaagaggcactggaagccttcagaggacatgcagttcatggtgatggatggcctacacccacagaatgcagccctctatatggatggacactacacaggtgacgttcactaccgtctcgggccatgacctaaacaactccatcacattgttgcctattctgcttatgcaaggctcatagttaaagttgggtaaattagtttcatatatgtgtgatcttaagacaacagcatactgcttatatatcttagtttgtaatatttatcgccaactttaattgggtaatgttctctattcc

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