GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2019-03-25 14:55:56, GGRNA.v2 : RefSeq release 92 (Jan, 2019)

LOCUS       NM_001309978            1318 bp    mRNA    linear   VRT 04-JUN-2017
DEFINITION  Fundulus heteroclitus homeobox protein Hox-A2b-like (LOC105926292),
            mRNA.
ACCESSION   NM_001309978 XM_012862546
VERSION     NM_001309978.1
KEYWORDS    RefSeq.
SOURCE      Fundulus heteroclitus (mummichog)
  ORGANISM  Fundulus heteroclitus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
            Fundulidae; Fundulus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ469738.2.
            On Jun 19, 2015 this sequence version replaced XM_012862546.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ469738.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02116571, SAMN03775336
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1318
                     /organism="Fundulus heteroclitus"
                     /mol_type="mRNA"
                     /db_xref="taxon:8078"
     gene            1..1318
                     /gene="LOC105926292"
                     /gene_synonym="Hoxa2x"
                     /note="homeobox protein Hox-A2b-like"
                     /db_xref="GeneID:105926292"
     CDS             121..1110
                     /gene="LOC105926292"
                     /gene_synonym="Hoxa2x"
                     /note="homeobox A2x; Hox A2b; Homeobox protein Hox-A2;
                     homeobox A2b"
                     /codon_start=1
                     /product="homeobox protein Hox-A2b-like"
                     /protein_id="NP_001296907.1"
                     /db_xref="GeneID:105926292"
                     /translation="
MSYAFGRESGFINSRPSLAECLTSLANPVGDAFQSPSIKSSTPIPPPPFEQTIPSLKPSVHPRCKRDLKGHGPLEAAPLPTEYPWMKEKKSIKRSQATASSVAAAASDLSPQGSPERPESAVGPTECSGASKRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTEKQVKVWFQNRRMKHKRQSHCKENRDSDGKYPAGLEDEMEPAEESGALPQRERSSLHQNTLTSQQGPNGHNGQNHSPPSCNEKNPTHFTSPAPVCASTIGPDNAQSPGLDASLQDLYVFSPSASFSSDSSQSPLPLSSETFSLFSETLTTMDLQNLSY"
     misc_feature    order(514..528,532..534,583..585,601..603,640..642,
                     646..651,658..663,667..675,679..684)
                     /gene="LOC105926292"
                     /gene_synonym="Hoxa2x"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(520..522,529..531,649..651,658..663,670..672)
                     /gene="LOC105926292"
                     /gene_synonym="Hoxa2x"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    523..681
                     /gene="LOC105926292"
                     /gene_synonym="Hoxa2x"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:278475"
ORIGIN      
cgcccgggccggtgtcagaataaaacgcgtgttattttcccgaacccttgtttttccacgccgaatctgcgcttttttttttttttttttaccctccatcacaacaacaagcaggaggacatgagttacgcattcggccgagagagcggtttcatcaacagccggccgtcgctcgccgagtgcctgacatctctcgccaaccccgtcggagacgcgtttcaaagtccatcaatcaagagctcgacaccgattccccctcctcccttcgagcagaccatcccgagcttgaagcccagcgtccacccacgctgcaagcgggatctgaaaggccacggtccgctggaggctgcgcctctgcccacggagtacccgtggatgaaggagaagaaaagcatcaagagaagccaggctactgcctcttccgtcgccgcagcagcgtctgacctctctccccaaggttctcctgagaggccggagagcgctgtcggtcctactgagtgttcgggggcatccaagaggctgaggaccgcgtacaccaacacccaactcctggagcttgagaaggagtttcacttcaacaaatacctgtgcagacccaggcgggtggagatagccgcgctgctggatttgacggagaagcaggtgaaagtgtggtttcagaacaggcggatgaagcacaaaaggcagagccactgcaaggagaacagggacagcgacggcaaatatcccgcgggcctggaggacgagatggagccggccgaggagagcggcgcgctcccgcagagggagcggtccagtttgcaccaaaacaccctgacttcacaacagggtccgaacggacacaatggacagaaccacagccctccgagctgcaatgagaaaaatcccacacattttaccagcccagcacccgtctgcgcgtcaacaataggcccggacaatgcccagtcccccggcctggacgcctctttgcaggatttgtacgttttctccccctcggcttctttctcgtcggattcatcgcagagtccgttgcctttatcgtccgaaacgttcagccttttctcagagacactcacaacaatggacctgcaaaatctcagctactgaaaatccgcttccgttttatattcaattcaatccctttattcagtttttcgtatgtgggaaataataaaagaaagaccctcacgcaaggtgagttaatgaccacattcaggtttatttttatattcatctgagattattatgtttcttgaaataaatttgtacaagtataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]