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2024-03-29 14:21:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001309768            1355 bp    mRNA    linear   INV 17-APR-2022
DEFINITION  Hydra vulgaris homeobox protein OTX2-like (LOC100211908), mRNA.
ACCESSION   NM_001309768
VERSION     NM_001309768.1
KEYWORDS    RefSeq.
SOURCE      Hydra vulgaris (swiftwater hydra)
  ORGANISM  Hydra vulgaris
            Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina;
            Anthoathecata; Aplanulata; Hydridae; Hydra.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF114441.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF114441.1, DN248875.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00242134, SAMD00242135
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Hydra vulgaris"
                     /mol_type="mRNA"
                     /db_xref="taxon:6087"
                     /chromosome="8"
                     /map="8"
     gene            1..1355
                     /gene="LOC100211908"
                     /gene_synonym="CnOtx"
                     /note="homeobox protein OTX2-like"
                     /db_xref="GeneID:100211908"
     CDS             22..744
                     /gene="LOC100211908"
                     /gene_synonym="CnOtx"
                     /function="cell movement; anterior specification"
                     /note="homeobox protein Otx"
                     /codon_start=1
                     /product="homeobox protein OTX2-like"
                     /protein_id="NP_001296697.1"
                     /db_xref="GeneID:100211908"
                     /translation="
MTMSDSPLDSPLNMNSGAIKSETPPKRRRERTTFTKAQLDVLEDMFGKTMYPDVFMREEVAKKINLAEARVQVWFKNRRAKFRRSRENPGRHFDNNKYLGREKLMPEDLIRTFPKSSRGTPHSYPNTSNYPPLWKYPVADHSPPYAGNNIIEEPVYRQSNPYAPISPYEYNFPSGRPPYFTQPPYYSPSAPSQDYLSNSVSAPSSTNSISSLSFSQHDTRNELNLPASYWSGAGYMGANM"
     misc_feature    order(103..117,121..123,172..174,190..192,229..231,
                     235..240,247..252,256..264,268..273)
                     /gene="LOC100211908"
                     /gene_synonym="CnOtx"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(109..111,118..120,238..240,247..252,259..261)
                     /gene="LOC100211908"
                     /gene_synonym="CnOtx"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    112..270
                     /gene="LOC100211908"
                     /gene_synonym="CnOtx"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      
cacgagtttatcttgtgcgcgatgaccatgtccgatagccccttggatagtccattaaacatgaattctggagcaataaagtcagagactccacctaaaagacggcgtgaaaggaccacttttacaaaagcacaacttgacgtgctggaagatatgtttggaaaaactatgtatccggatgtatttatgagagaagaagtagctaaaaaaattaatttggctgaagcccgagtacaggtttggttcaaaaatcgacgtgcaaagtttcgacgctctcgtgaaaaccctggtcgacattttgataataataagtatttagggcgtgagaaattaatgcccgaagatctcattcgaacctttcctaaaagtagtagaggcactccacactcttacccaaatacaagcaattatcctccgctatggaaatatccagttgcagaccacagtccaccatatgcaggaaataatataattgaagaaccggtttatagacaatcaaacccatacgctcccatctcaccttatgaatataattttcctagtgggagaccaccatactttactcagccaccttattatagtccgtctgcacctagtcaagattatctttcaaattccgtttcggcgccatcaagcacaaatagtatatcaagtttatctttttcgcaacatgacactagaaatgaattaaatcttcctgcgtcttattggagtggagcagggtatatgggtgcgaatatgtagtttaattataaagcacctcaaaaatggaaatctatttcagatagacacaacaaaattgatttaaaaatcaaacagttgtacatagaaaagctttttttacaattcattaaaaaaagatatcctttagatttaagtctaagaccaataaaccaatcgattgcgtaaattacaaaactaattggttgtgtctagaaaacaattgtacagattggtagtttcaaaaaatactactggactaaaacattagaacaactcacaagttgttttatttgcatttttaaaatatatataccatgttttaaatttttatcgtagaactattatgcagttatttttgttcaactttttatttatgtataaatcgatatgacactgctatattaccagtgaaaatgtcggtttagcaaaatttcaagcctttatgaaaaggaaaatggctgaaacaatgatttttttcacaattttgttttaacaaatttattttgttaataaaaaaaatgtagcagcgatcaaaaatggaaaaatatatgttattgaaacaactttttaattttctatttatcaattaactgatttaacgtataaacctgttttagattttttctcgtgcc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]