GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2020-11-27 00:18:59, GGRNA.v2 : RefSeq release 202 (Sep, 2020)

LOCUS       NM_001306527            3256 bp    mRNA    linear   INV 27-MAY-2020
DEFINITION  Caenorhabditis elegans Enhanced RNAI (RNA interference) (eri-6),
            mRNA.
ACCESSION   NM_001306527
VERSION     NM_001306527.4
DBLINK      BioProject: PRJNA158
            BioSample: SAMEA3138177
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 3256)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 3256)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAY-2020) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3256)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (21-APR-2020) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 3256)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003279).
            On May 27, 2020 this sequence version replaced NM_001306527.3.
FEATURES             Location/Qualifiers
     source          1..3256
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="I"
     gene            1..3256
                     /gene="eri-6"
                     /locus_tag="CELE_C41D11.1"
                     /db_xref="GeneID:172050"
                     /db_xref="WormBase:WBGene00016561"
     CDS             1405..2487
                     /gene="eri-6"
                     /locus_tag="CELE_C41D11.1"
                     /standard_name="C41D11.1e"
                     /note="Product from WormBase gene class eri;
                     Partially confirmed by transcript evidence"
                     /codon_start=1
                     /product="Enhanced RNAI (RNA interference)"
                     /protein_id="NP_001293456.1"
                     /db_xref="EnsemblGenomes-Gn:WBGene00016561"
                     /db_xref="EnsemblGenomes-Tr:C41D11.1e"
                     /db_xref="GeneID:172050"
                     /db_xref="InterPro:IPR009689"
                     /db_xref="UniProtKB/TrEMBL:G5EDX2"
                     /db_xref="WormBase:WBGene00016561"
                     /translation="
MSANREKKKLETVIKNLEKKIEDQKANAGTKKKEAEQKENLRIEQEKIKKKKEQERLEVPPTPFDDLNSQSAKTLRVEKAIENLKFLGGKSTEFYRRVIGRLGKSGLFKWKMSKREGFYLYHACGLTRRKLRTLKAHFSKSGCSDPFPSVHEIMKIEKIVGAGEQFSVTEHDKDGEEVVAAHLVDVIKYLTDRIHHLIDNGNLVIGTDPIWLTILGDKGSDEFKLCLSIGNAKNPNSCCHLIPLGIFNDDEKSSNISNDLTPIVAQLNSLKELKLKVAGTDVTVPVQQFLGGDMKFQYDVLGHQGASSQFHCMFCNSLKSRLIGGYIRGANVTLRTAASYKENSGKDGNNYARKKRITGT"
     misc_feature    1609..2220
                     /gene="eri-6"
                     /locus_tag="CELE_C41D11.1"
                     /note="Protein of unknown function (DUF1280); Region:
                     DUF1280; pfam06918"
                     /db_xref="CDD:284363"
ORIGIN      
aaaaatatgaccgataaggagaatttctactcgggattctttcttggacgactgccaggctcatttgacagccgatttttgattaaagtcgcctgttttcagcccggaaaagaggaaagaaatgtttttgagcttacaacagatacaaagagagaagaagattatggagaaatggtgcatttttgggtagagagaataagatgtttgacagaatccatacggataaagatttttatgttggagtcaacgaccttccagattcagatatctacatacatccagatttaggaaaaatgattgatacccgttcaattgtgacgccgggaaagaaatacaactttatcactttcgaggtcaaacagaatgaaaacaatagttttgatattgaaattgttggtggagaagttcagggaaaagaaaagaattctgaagagccatctgccaaggaaaaaataattcaaaaaatggaacaagttcatgaagtgatgaaagtagagtatgagtacaataaaaatgaagaaaccgcgaattgggatgtaatcggacatttgaaactcatcaaattttatgacaaagatctcacatctgggcttcgtcctgtactacggcttatggataatagacacgttgcgttgttcaagaagcagagagaaaccatgccaatcaagatgatcaaagtgattgaagtagacggaatttggaaggatgatgttaatttcgtaccgcaagaaggtacacttcttcctacagatcatgatgaaaaaaccgtcgtcctattgggaaatgattaccgtcataaattcgaacgtttgttcaaacgtgaagacgtgttcagattggaatccaataatacgcttacgcatcttaaattctggcagttcacaacggagcagacttgctgcctcttcatcatcgtcatcaatctccaaccaatacgaacttcgctttagggaaatgtgtagcgagtcctccgatcttgatcattggaatttgtgaagcttcgtcgagcatcaccaatccaatctcattcgctttgctggcgaatccaatatcattgagagctgtgtgaatcgatgctgtagtcccgatgatgattgctgtctcatgaatcttcatcaacgccgtccagatgcttgtccttcaacaacattcgccggcggctccactgcttcaggcatctcttcatcacgattgacgggctcaagcgggtcggcgccgtcatcttttccacgatccgacatcgtctcacttcacaaagaacaaggaaagttacagcggttgcgggacacatcacacttcgaatacgctcagaactggaaagaaaacaatgttaccgggcaaatagacgtcggaattgattaaatatgtgaaaaagaggaaaaaataaaatttcgtgattcctggatgtcagcgaaccgtgagaagaagaagttggagactgtgatcaaaaatcttgagaaaaaaattgaagatcaaaaggcaaacgcaggaactaaaaagaaagaagcggagcaaaaagaaaatcttcgaattgagcaagaaaaaattaagaaaaagaaggagcaagaaagattggaagtcccacctacaccttttgatgatctcaatagtcagagtgcaaaaactttaagagttgaaaaagcaatagagaatttgaaatttctaggcggaaaaagcaccgagttttatcgacgagttataggaaggttgggaaagtcaggattgttcaaatggaagatgtcgaagagagaaggattttacctctatcatgcatgtggtctaacccgaagaaagctgcgcacgctgaaggcacattttagtaaatccggatgttctgatccattcccttctgttcacgaaattatgaaaattgagaagatcgtgggtgcaggcgaacaattttccgtgactgagcacgataaggacggcgaggaggtggtggcagcgcatctagtcgatgttatcaaatatctcacggacaggatccatcacttgattgataatgggaacctggtcatcggtactgatccaatctggctcaccattctaggtgataaaggatcagacgagttcaagctgtgcctctctataggtaacgccaaaaatccgaacagttgttgtcatttgatcccgctcggcattttcaacgatgacgaaaagtcttctaacatctcgaatgaccttactccgatcgtggcacagctcaatagcctcaaagagctgaaactgaaagtagccgggaccgacgtcactgtgccagtccagcagtttcttggtggggacatgaagttccagtacgatgtcctgggccaccaaggagcttctagtcagtttcattgtatgttctgcaactcgctgaaaagtcggttaatcggtggctacattcggggagcaaatgttacacttaggacagctgccagctacaaggagaacagtggcaaagatgggaacaattacgccagaaaaaagagaataaccggcacctaaacgagttgagaagtgacttacgggagaagaagagtgttatattcagtcaaggcttgaagattgatatgttggaatcccaacttagtcaacgtcagacagaatttgaataccgatctgccaatgcagccgcaaattctttcacaagaaaagatcacggaaaactctaccattgcttcgatattaagaaccaggattcgacgtctgtaagcgataccatgacatgtcggtgctcaatgaagccctgtgttttctacttggacagcctccctgcggccaaaacgccgtctctgacgcaacttcgtagaattgtcgttcttatgcaacaaaaaccttcacaaaagatcgatccgaaggagatgttgttgatgacatccatgcatcttcctttcccgatgcaagaaccatctaccgaatattttaacgcgatttccggatgctcgacttcgtatatttgtgtggaagaaatggggatcggcttctcattccgacgacacgtggaaaaattgtggatgaagaacttacctccggcgaccaatggaacagataaagctgccaatgatttgaaaaatcagctcaaagttagaaggaatgtaggcaagcacgatagaacaagtcgatacgcacgaaaatcgcataattaaacattcccgtcttcctgttctgttgccatttacaaaaaattttttcccaaatgatcgcccgcgtcgtcatctgtttcttttttccaattcaatttgttttttttagttgtttttttcaatacgaattt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]