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2024-04-19 05:30:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001302909            3047 bp    mRNA    linear   PLN 18-OCT-2018
DEFINITION  Solanum lycopersicum protein argonaute 10 (LOC101259671), mRNA.
ACCESSION   NM_001302909
VERSION     NM_001302909.1
KEYWORDS    RefSeq.
SOURCE      Solanum lycopersicum (Lycopersicon esculentum)
  ORGANISM  Solanum lycopersicum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; lamiids; Solanales; Solanaceae;
            Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from JX467717.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JX467717.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06134382, SAMN06134383
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Solanum lycopersicum"
                     /mol_type="mRNA"
                     /db_xref="taxon:4081"
                     /chromosome="9"
                     /map="9"
     gene            1..3047
                     /gene="LOC101259671"
                     /note="protein argonaute 10"
                     /db_xref="GeneID:101259671"
     CDS             53..2932
                     /gene="LOC101259671"
                     /note="AGO10A"
                     /codon_start=1
                     /product="protein argonaute 10"
                     /protein_id="NP_001289838.1"
                     /db_xref="GeneID:101259671"
                     /translation="
MNPVQKNPKTTQNGKGPPNQEPPNNKIHIQTSPPSRNRGRRRGRGGKKSDQGETFMRPSSRPCTAASKPVIAASVEATNVSGVESNGTSSGFPSSSKSLCFAPRPGYGQLGTKCIVKANHFLADFPDKELNQYDVTVIPEVSSRTVNRAIMAELVKLYKESHLGMRLPAYDGRKSLYTAGELPFKWKEFTIKLIDEDDVINGPKREREYKVVIKFVARANLHHLSEFLAGKRADGPKEALQILDIVLRELSIKRYCPVGRSFFSPDIRKPQPLGDGLEAWCGFYQSIRPTQMGLSLNIDMASAAFIEALPVIEFVAQLLGKDVSSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTTQPTRELVFPVDDNLTMKSVVEYFQEMYGFTIKNTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLSEKQITSLLKVTCQRPRDRENSILQTVQHNDYNEDPYAKEFGIKISEKQASVEARVLPAPWLKYHETGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCNELTQMCQVSGMEFNPDPIIPIYMARPDQVEKALKHVYHSCVNKLKGKELELLLVILPDNNGSLYGDIKRICETDLGLITQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPARGTVSGGMIRDLLISFRKATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHKDRSSIDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMPETNSGSPHQGSSKAIRETGVRPLPALKENVKRVMFYC"
     misc_feature    362..2929
                     /gene="LOC101259671"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
ORIGIN      
gaaagaaagttcagaacaacacattgtgatcaaaccccatttgcaaaacactatgaatccagttcagaaaaaccccaagaccactcaaaatggcaaagggccaccaaatcaagaacctccaaacaacaaaatccatatccagacttcacccccttcaagaaatagaggtagaaggagaggaagaggaggcaaaaagtcagatcaaggtgagacctttatgaggcctagttcaaggccttgtacagcagctagcaagccagttatagcagcttctgttgaagcaacaaatgtgtcaggagttgagagtaatggaactagctcagggtttccttcttcaagtaagtctttgtgttttgccccaagaccaggttatgggcaacttgggacaaaatgcattgtaaaagcaaaccattttttggctgattttccagacaaagagttgaatcagtatgatgttactgtaatccctgaagtgtcatcaagaactgtaaacagagctatcatggcagagctggtgaaactgtacaaagaatcccacctagggatgagattaccagcttatgatggcagaaagagtctttacactgctggtgaacttccttttaagtggaaggagtttaccattaagcttattgatgaagatgatgtgatcaatggtccaaagagagagagagaatataaagtggtgattaagtttgttgcaagagcaaatctacatcatctgagtgaatttcttgctggtaagcgcgctgacggtccaaaagaagctcttcaaattctggacattgttttgagagagctttcgatcaagaggtattgtccagttggaagatctttcttttcacctgatatacggaagcctcaacctcttggtgatggtttagaagcatggtgtggattctaccagagcattagaccgacccaaatgggcttgtcgcttaacattgatatggcttcagctgcatttattgaagctctaccagtgatagagtttgtagctcagcttctaggaaaagatgtgtcgtcaagacccttatctgactcggatcgtgtaaagattaagaaggctcttagaggagtgaaagttgaagtgacacacaggggcaatgtccggagaaagtatcgtgtttcaggactaacaactcagcccacgagggaactagtatttcctgttgatgacaatttaaccatgaagtcggttgttgaatactttcaagaaatgtatggctttactataaagaatacacatcttccatgccttcaagtagggaaccaaaagaaagccaactatttacctatggaggcgtgtaaaattgttgagggacaacgatacaccaaaaggttgagtgagaagcaaattacttctcttttgaaggtcacatgccaaagaccaagagatcgtgagaactcaatcttgcagactgttcaacacaatgattataatgaagacccatatgctaaggagtttggaatcaaaatcagtgaaaagcaagcatctgtggaagcccgtgtgttgcctgctccttggctaaaatatcacgagacggggaaggagaaggattgtctacctcaagttgggcagtggaatatgatgaacaagaaaatgataaatgggatgacagtcaaccgttgggcatgcatcaacttttcacgaagtgtccaagagagtgttgctcgtggcttttgtaacgaactcactcagatgtgtcaagtatctggaatggagttcaatccggacccaataattccaatatacatggccaggccagatcaagtagagaaagccttgaagcatgtatatcattcatgcgtaaacaagctaaaaggaaaagaacttgagcttctgttggtcattctaccagataacaatggttccctctatggtgacataaagcggatatgtgagactgatctcggtttaataacccaatgctgtctgacaaagcatgtattcaagatcagcaaacaatatttggcaaatgtatccttgaagatcaacgtcaagatgggtggtcgaaataccgtcctgttggatgctattagctgtagaataccattagtaagtgatatacctaccatcatattcggagcagatgtgacccaccctgaaaacggagaagattctagcccttcaattgcagctgtagtagcttctcaagattggcctgaggtgacaaaatacgccggtcttgtttgcgctcaagctcatagacaagaacttatacaagatttgtacaagacatggcatgatcctgcacgtggaacagttagtggtggcatgataagggatcttcttatatccttcagaaaggccacaggccaaaagccacaaaggataatcttttatcgggatggagtgagtgaaggtcaattttaccaagtactgcttttcgagttagatgcaattaggaaggcttgtgcgtctttagaaccaaattatcaaccgccagtaacttttatcgtggtacagaaacgacatcacacccgactatttgcaaataatcacaaggacaggagcagcattgataggagtggaaacatattgcctggtactgtggttgatacaaaaatctgtcatccaacagaattcgacttctatctttgtagccacgctggcattcagggtacgagccggcctgcacattaccatgttctgtgggatgaaaacaatttcacagcagacggaatccagtccttgactaacaatctctgctatacatatgcaagatgcacacgttctgtctctgtggttcctcctgcatattatgcacatttagctgcatttcgagccagattctacatggaaccagacatgcctgaaactaattcaggcagccctcatcaaggcagcagcaaggctatacgagagacgggtgttaggccattgcccgctcttaaagaaaatgtgaagagagtgatgttttattgttaggaagaagagataacaagtgagtagcaaatgtaacaaatagtaagtagggggttcagttcagaccacatgaatctttgtttgtaaatgtatgttgatcatcctaggttaattgtca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]