LOCUS       NM_001286337            2002 bp    mRNA    linear   VRT 03-SEP-2021
DEFINITION  Haplochromis burtoni homeobox protein Dlx4a-like (dlx4a), mRNA.
ACCESSION   NM_001286337 XM_005942992
VERSION     NM_001286337.1
KEYWORDS    RefSeq.
SOURCE      Haplochromis burtoni (Burton's mouthbrooder)
  ORGANISM  Haplochromis burtoni
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes;
            Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini;
            Haplochromis.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Renz AJ, Gunter HM, Fischer JM, Qiu H, Meyer A and Kuraku S.
  TITLE     Ancestral and derived attributes of the dlx gene repertoire,
            cluster structure and expression patterns in an African cichlid
            fish
  JOURNAL   Evodevo 2 (1), 1 (2011)
   PUBMED   21205289
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from FN667600.1.
            
            On Nov 1, 2013 this sequence version replaced XM_005942992.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FN667600.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMN00761590, SAMN00761594
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Haplochromis burtoni"
                     /mol_type="mRNA"
                     /db_xref="taxon:8153"
     gene            1..2002
                     /gene="dlx4a"
                     /note="homeobox protein Dlx4a-like"
                     /db_xref="GeneID:102299128"
     exon            1..824
                     /gene="dlx4a"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    302..304
                     /gene="dlx4a"
                     /note="upstream in-frame stop codon"
     CDS             488..1264
                     /gene="dlx4a"
                     /note="distal-less homeobox protein 4a"
                     /codon_start=1
                     /product="Homeobox protein Dlx4a"
                     /protein_id="NP_001273266.1"
                     /db_xref="GeneID:102299128"
                     /translation="

MMTMSSISDTLVTSDPSKSAFLEFGGHSYPGHPGHQQPSPGLSHNHYPVHGLHAVGPSQHDGPFSSGASSYGRPLGYPPYHSPVSAHHPGAYLPYQHGGHSGALGHTRLDDAEHEKPTAVIENGEVRLNGKGKKIRKPRTIYSSLQLQALNQRFQQTQYLALPERADLAAKLGLTQTQVKIWFQNKRSKYKKIMKNGPCGPEGEHLAPPPPASSSPCSLWDISMAAKGAPVHSGGYVNNFGHWYPGHQQEPMPRTQMM"

     misc_feature    order(893..907,911..913,962..964,980..982,1019..1021,
                     1025..1030,1037..1042,1046..1054,1058..1063)
                     /gene="dlx4a"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    899..1060
                     /gene="dlx4a"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(899..901,908..910,1028..1030,1037..1042,1049..1051)
                     /gene="dlx4a"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            825..1021
                     /gene="dlx4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..2002
                     /gene="dlx4a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctctccagttctctccgctgccaggagtctctttacaacaaaccgggaatcgagcgggaacctggttattttggcccgagagtaggaggaaaacctgagcacgtcgaaggatattcgtaattaaacctgctgcttggttaagagttcctgttttgttttctctgttcgctgacttcccctgttggtctgcgtgtttccctgccatgcgtccagtcttctacggttggacttaatgcctttaaacactgagcgtgatgtttgtggagctttcagctgggatgtagcggagggcagacccacctaaagtcactccacgggaatacagagacgctttgtttttaaagagctgcttcttaaagtcttctgttttcttgtggggtgtttttcttgtttctttttaaaccggttgccttatcatgaccctcatctggaggtcatagccgacccgtcgtcctctctcccctgcacatcgctgcccctctccccaatgatgactatgagctccatatcagacactttagtaacgtccgatccgtccaaatctgcgtttttggagttcggtggacacagctaccctggacaccctggacatcaacaaccttcgccaggcttatcccacaaccattatccggttcacggactgcacgctgtcggaccctcgcagcacgatgggcccttctcctccggggcttcctcttacggtcgcccgctgggatacccaccctaccacagtccagtgagcgcgcatcaccccggtgcctacctgccttatcagcacggtggtcacagcggcgcgctcggacacaccagactggacgatgcggagcatgagaagcccacagcggtgatagaaaatggagaagtgaggctcaatggaaaagggaaaaagatcaggaagcctcggaccatctactccagcctgcagctacaggctctcaaccagcgcttccagcaaacccagtacctcgccctgcccgagagggccgacctggccgccaaactgggcctcacgcagacacaggtgaaaatatggttccaaaataaacgatctaaatacaagaagatcatgaagaatgggccctgtggacccgagggagaacaccttgcccctccaccaccagcctcctcctcgccgtgttccttgtgggatatcagcatggctgccaaaggtgcaccggtgcactcaggaggatatgtgaacaattttggacactggtatcccggacaccagcaggaacccatgccaagaactcagatgatgtgacagacggggagatgcgacgcttccgggacaaattgcggaattattccggcaggctgaactgaagctctaagagacaaggacattttttagagtctgagccactctggaggcaaaaatataagcagcagctatgcaataaaactaaagtggacagatataggggaaactgctaaaatagctgtaaaatacacaatattataacagaaagaaatactacaatcagtacaattttcacacgagctgaatttactattagctgttagcggtgtgttgatgatgtctgataagccttggaataagggatcgacaaagtggctcaggtctcatttgtaaaatataactagcgagatatgaatattgataaacttctcccagactcagctatgaggagtgaatcatcagatctaccaggctgagcagtaagtgttcggtacttacacaaagccatagcactgtgtatacctgtttgaagtatttcactgtcatgattttggtgtttactttgccagttgcctaatatcaaactgcgcgtatccgactccaatttaaagcgagactgcatttgtactggtgaccacgggtccaggaagtctcagttacagtataaatatggtaaatgtcaaatgtagctttacagtagcagtagaactcagcttttcatttgtatgaggaggaatttagctttaaatatatttttttaaaaataaccttacctaagttaaaaaaaaaaaaaaaaaa

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