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2024-03-28 17:07:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001284471            1496 bp    mRNA    linear   MAM 03-FEB-2021
DEFINITION  Canis lupus familiaris pancreatic and duodenal homeobox 1 (PDX1),
            mRNA.
ACCESSION   NM_001284471 XM_543155
VERSION     NM_001284471.2
KEYWORDS    RefSeq.
SOURCE      Canis lupus familiaris (dog)
  ORGANISM  Canis lupus familiaris
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae;
            Canis.
REFERENCE   1  (bases 1 to 1496)
  AUTHORS   Takemitsu H, Yamamoto I, Lee P, Ohta T, Mori N and Arai T.
  TITLE     cDNA cloning and mRNA expression of canine pancreatic and duodenum
            homeobox 1 (Pdx-1)
  JOURNAL   Res Vet Sci 93 (2), 770-775 (2012)
   PUBMED   22172402
  REMARK    GeneRIF: These results confirm that similar to humans, Pdx1 plays
            an important role in expression of insulin gene in canines.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAAUVH010000302.1 and HQ454506.1.
            
            On May 9, 2015 this sequence version replaced NM_001284471.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: HQ454506.1, AB196439.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4547739, SAMN11526751
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                JAAUVH010000302.1  11875875-11875895   c
            22-986              HQ454506.1         22-986
            987-1496            HQ454506.1         988-1497
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Canis lupus familiaris"
                     /mol_type="mRNA"
                     /sub_species="familiaris"
                     /db_xref="taxon:9615"
                     /chromosome="25"
                     /map="25"
                     /breed="Labrador retriever"
     gene            1..1496
                     /gene="PDX1"
                     /gene_synonym="IPF1; PDX-1"
                     /note="pancreatic and duodenal homeobox 1"
                     /db_xref="GeneID:493994"
                     /db_xref="VGNC:VGNC:44396"
     exon            1..501
                     /gene="PDX1"
                     /gene_synonym="IPF1; PDX-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..947
                     /gene="PDX1"
                     /gene_synonym="IPF1; PDX-1"
                     /note="pancreatic duodenal homeobox gene 1; insulin
                     promoter factor 1, homeodomain transcription factor;
                     pancreatic and duodenum homeobox 1"
                     /codon_start=1
                     /product="pancreas/duodenum homeobox protein 1"
                     /protein_id="NP_001271400.1"
                     /db_xref="GeneID:493994"
                     /db_xref="VGNC:VGNC:44396"
                     /translation="
MNSEEQFYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPPFPGTLGALEQGSPPDISPYEVPPLADDSAVAHLHHHLPAQLALPHPPAGPFPEGAEPAALEEPSRVQLPFPWMKSTKAHAWKGQWAGGAYVAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKRSCGTAPGGVADAEPEQDCAVSSGEELLALPPALPPGGAVPPAVPAAAREGRLPPGLSASPQPSSVAPVRPQEPR"
     misc_feature    order(534..548,552..554,603..605,621..623,660..662,
                     666..671,678..683,687..695,699..704)
                     /gene="PDX1"
                     /gene_synonym="IPF1; PDX-1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    540..701
                     /gene="PDX1"
                     /gene_synonym="IPF1; PDX-1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(540..542,549..551,669..671,678..683,690..692)
                     /gene="PDX1"
                     /gene_synonym="IPF1; PDX-1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            502..1483
                     /gene="PDX1"
                     /gene_synonym="IPF1; PDX-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
aaagcgagcaggggtggcgctgggagtgggagcgctgcacggctccagctccccggctccagctccctactcctggcctccaagacccggccgcagccatgaacagcgaggagcagttctacgcagcgacgcagctctacaaggacccgtgcgccttccagcggggcccggctcccgagttcagcgccagtccccctgcgtgcctgtacatgggccgccagcccccgccgccgccgcccccgttcccggggacgctgggagctctggagcagggcagccccccggacatctccccgtacgaggtgcctcccctggccgacgactccgcggtggcgcacctccaccaccacctcccagctcagctcgcgctcccccacccgccggccgggcccttcccggagggagccgagccagcagccctggaggagcccagccgcgtccagctgcctttcccgtggatgaagtctaccaaggctcacgcctggaaaggccagtgggcaggcggcgcctacgttgcagagccagaagaaaacaaacggactcgcactgcctacactcgcgcccagctgctggagctggagaaggagttcctgttcaacaaatacatctcgaggccacgcagggtggagctggccgtcatgctgaacttgaccgagaggcacatcaagatctggtttcagaaccgccgcatgaaatggaaaaaggaggaggacaagaagcgcagctgcggtacagcgcccgggggcgtcgcggacgcggaaccagagcaggactgtgcggtgagctcgggggaggagctgctggcactgccgccggcgctgcccccggggggtgctgtgccgcctgctgttcccgccgctgcccgggaaggacgtctgccgccgggcctgagtgcctcgccgcagccgtccagtgtggcgcccgtgcgaccgcaggagccccggtgagagatgggggctcctccttgccaggcggtttcaaccactggtaaagaaggggggagcaggcgtaggaccccgggtgtagacaaccagctctggcccttcaaggggttgggaactgcagaggacaccccagatggaaggggagaacttgagttctcaggcccctgtgctaactgggacgccttagagagacactgggagaccttctggaagaagaggagaggctttctgttatatctggggcctcttccggtgatattgttggattggtgacatctgctgctgtgcaggtcctagcactccagaaccatggacctctttagagaagccagctcttcaaaagacaacaggaactacaagtcggaatgccctccaacacattttgcaggcaagctggacggagcaccttcatctgtcccgaaacagagccatttttactcaggcttccaccttaaagcttagaaataattgaaaggaaatatctaaggtttcaaagacctagtgaaattgatgcctgtggaatagaatgattcctcctcaaaaaaaaaaaaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]