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2024-03-29 16:45:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001281609            1302 bp    mRNA    linear   ROD 17-DEC-2022
DEFINITION  Mesocricetus auratus LIM homeobox 1 (Lhx1), mRNA.
ACCESSION   NM_001281609 XM_005076921
VERSION     NM_001281609.1
KEYWORDS    RefSeq.
SOURCE      Mesocricetus auratus (golden hamster)
  ORGANISM  Mesocricetus auratus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Cricetidae; Cricetinae; Mesocricetus.
REFERENCE   1  (bases 1 to 1302)
  AUTHORS   McCann KE, Sinkiewicz DM, Norvelle A and Huhman KL.
  TITLE     De novo assembly, annotation, and characterization of the whole
            brain transcriptome of male and female Syrian hamsters
  JOURNAL   Sci Rep 7, 40472 (2017)
   PUBMED   28071753
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1302)
  AUTHORS   Rudnick A, Ling TY, Odagiri H, Rutter WJ and German MS.
  TITLE     Pancreatic beta cells express a diverse set of homeobox genes
  JOURNAL   Proc Natl Acad Sci U S A 91 (25), 12203-12207 (1994)
   PUBMED   7991607
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from X81407.1.
            
            On Aug 1, 2013 this sequence version replaced XM_005076921.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X81407.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1302
                     /organism="Mesocricetus auratus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10036"
     gene            1..1302
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="LIM homeobox 1"
                     /db_xref="GeneID:101828732"
     exon            1..181
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..1232
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="Homeobox protein LMX-2; Homeobox protein Lim-1; LIM
                     homeobox protein 1"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx1"
                     /protein_id="NP_001268538.1"
                     /db_xref="GeneID:101828732"
                     /translation="
MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHSATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPVDLPFVPSSGPSGTPLGGLDHPLPGHHPSSEAQRFTDILAHPPGDSPSPEPSLPGPLHSMSAEVFGPSPPFSSLSVNGGASYGNHLSHPPEMNEAAVW"
     misc_feature    21..176
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="The first LIM domain of Lhx1 (also known as Lim1)
                     and Lhx5; Region: LIM1_Lhx1_Lhx5; cd09367"
                     /db_xref="CDD:188753"
     misc_feature    order(21..23,30..32,84..86,93..95,102..104,111..113,
                     162..164,171..173)
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188753"
     misc_feature    198..365
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="The second LIM domain of Lhx1 (also known as Lim1)
                     and Lhx5; Region: LIM2_Lhx1_Lhx5; cd09375"
                     /db_xref="CDD:188761"
     misc_feature    order(198..200,207..209,264..266,273..275,282..284,
                     291..293,351..353,360..362)
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:188761"
     misc_feature    393..578
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="propagated from UniProtKB/Swiss-Prot (P63008.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    495..497
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="Phosphoserine.
                     /evidence=ECO:0000250|UniProtKB:P63007; propagated from
                     UniProtKB/Swiss-Prot (P63008.1); phosphorylation site"
     misc_feature    order(552..566,570..572,621..623,639..641,678..680,
                     684..689,696..701,705..713,717..722)
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    558..719
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(558..560,567..569,687..689,696..701,708..710)
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    <798..>1157
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="chromosomal replication initiator protein DnaA;
                     Region: dnaA; cl42516"
                     /db_xref="CDD:455861"
     misc_feature    891..1127
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /note="propagated from UniProtKB/Swiss-Prot (P63008.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            182..408
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /inference="alignment:Splign:2.1.0"
     exon            409..686
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /inference="alignment:Splign:2.1.0"
     exon            687..852
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /inference="alignment:Splign:2.1.0"
     exon            853..1295
                     /gene="Lhx1"
                     /gene_synonym="Lim-1; Lim1; lmx2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
aaccaaagaccatggtgcactgtgcgggctgcaaaaggcccatcctggaccgtttcctcttgaacgtgctggacagggcctggcatgtcaagtgcgtccagtgctgtgaatgtaaatgcaatctgaccgagaagtgcttctcccgggaaggcaagctctactgtaaaaacgacttcttccgatgtttcggtaccaaatgcgcaggctgtgcgcagggcatctctccaagcgatctggttcggagagcacgaagcaaggtgtttcatctcaactgcttcacctgcatgatgtgtaacaagcagctctccaccggagaggagctctatatcatcgatgagaacaagttcgtttgcaaagaggattacctgagtaacagcagtgtcgccaaagagaacagcctccattctgccaccacaggcagtgaccctagtttatcgcccgattcccaagacccatcgcaggatgatgccaaggactctgaaagtgccaacgtgtcagacaaggaaggcggaagcaatgaaaatgatgaccagaacctaggtgccaagcgcaggggaccccgaaccacgatcaaagccaagcagctggagacattgaaggcagcctttgcagctacacccaagcccacgcgacacatccgtgagcaactggcccaggagactggcctcaacatgcgtgtaatccaggtctggttccagaatcgacgttccaaggagcgaaggatgaagcagctaagcgccctgggcgcgcggcgccacgcctttttccgcagtcctcgccggatgcgaccgctggtggaccgcctggagccaggcgagctcattcccaacggccccttctccttttacggagattaccagagcgagtactatggtcccgggggcaactacgacttctttccgcaaggaccaccgtcctcgcaggcccagacaccagtggacctacccttcgtgccatcatctgggccttcagggacgccgctgggaggtctggaccacccgctgcctggccaccacccttccagcgaggcgcagcgattcaccgacatcttggcacatcccccaggggactcgcctagtcctgaacccagtctgcccgggcctctccactccatgtcagcggaggtcttcgggcccagtccacccttctcatctctgtcggtcaatggcggggccagctacgggaaccacctgtcccatcctcctgaaatgaacgaggcagccgtgtggtagcgggccttgcgtgggccacgggagctcgtggttgtacagagacgagcttttatttaaaaaaaaggaattc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]