GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-03-29 21:04:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001266492            1050 bp    mRNA    linear   PRI 21-FEB-2022
DEFINITION  Macaca mulatta msh homeobox 2 (MSX2), mRNA.
ACCESSION   NM_001266492 XM_001082405
VERSION     NM_001266492.1
KEYWORDS    RefSeq.
SOURCE      Macaca mulatta (Rhesus monkey)
  ORGANISM  Macaca mulatta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S,
            Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Marcais G,
            Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA
            and Norgren RB Jr.
  TITLE     A new rhesus macaque assembly and annotation for next-generation
            sequencing analyses
  JOURNAL   Biol. Direct 9 (1), 20 (2014)
   PUBMED   25319552
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from JV044304.1.
            
            On May 26, 2012 this sequence version replaced XM_001082405.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5038768.1078820.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4688315, SAMEA4688317
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Macaca mulatta"
                     /mol_type="mRNA"
                     /db_xref="taxon:9544"
                     /chromosome="6"
                     /map="6"
     gene            1..1050
                     /gene="MSX2"
                     /note="msh homeobox 2"
                     /db_xref="GeneID:694227"
                     /db_xref="VGNC:VGNC:84448"
     CDS             23..826
                     /gene="MSX2"
                     /codon_start=1
                     /product="homeobox protein MSX-2"
                     /protein_id="NP_001253421.1"
                     /db_xref="GeneID:694227"
                     /db_xref="VGNC:VGNC:84448"
                     /translation="
MASPSKGSDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSDKKPPKEASPLPAESASAGATLRPLLLPGHGAREAHSPGPLVKPFETASVKSENSEDGAAWMQEPGRYSPPPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS"
     misc_feature    order(449..463,467..469,518..520,536..538,575..577,
                     581..586,593..598,602..610,614..619)
                     /gene="MSX2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    455..616
                     /gene="MSX2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(455..457,464..466,584..586,593..598,605..607)
                     /gene="MSX2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      
cgacgaggagggcagagaagtcatggcttctccgtccaagggcagtgacctgttttcgcccgacgaggagggcccagcggtggtggccgggccaggcccggggcctgggggcgccgagggggccgcggaggagcgccgcgtcaaggtctccagcctgcccttcagcgtggaggcgctcatgtccgacaagaagccgcccaaggaggcgtccccgctgccggccgaaagcgcctcggccggggccaccctgcggccactgctgctgccaggacacggcgctcgggaagcgcacagccccgggccgctggtgaagcccttcgagaccgcctcggtcaagtcggaaaactcagaagatggagcggcgtggatgcaggaacccggccgatattcgccgccgccaagacacatgagccctaccacctgcaccctgaggaaacacaagaccaatcggaagccgcgcacaccctttaccacgtcccagctcctcgccctggagcgcaagttccgccagaaacagtacctctccattgcagagcgtgcagagttctccagctctctgaacctcacagagacccaggtcaaaatctggttccagaaccgaagggctaaggcgaaaagactgcaggaggccgaactggaaaagctgaaaatggctgcaaaacctatgctgccctccagcttcagtctccctttccccatcagctcgcccctgcaggcagcgtccatatatggagcatcctacccgttccatagacctgtgcttcccatcccgcccgtgggactgtatgccacgccagtgggatatggcatgtaccacctgtcctaaggaagaccagatcaatagactccatgatggatgcttgtttcaaagggcttcttctccctctccaagaaggcagtaccagccaatactcctgctctgctaaccctgcgtgcaccaccctaagcggctaggccgacagggccacatgacatagctgaaatttgttctttaggtggaggcaccaagccctgttttcttggtgtaatcttccagatgtccccttctcc
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]