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2024-04-19 08:18:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001266223            1841 bp    mRNA    linear   PRI 21-FEB-2022
DEFINITION  Macaca mulatta NK3 homeobox 1 (NKX3-1), mRNA.
ACCESSION   NM_001266223 XM_001106266
VERSION     NM_001266223.1
KEYWORDS    RefSeq.
SOURCE      Macaca mulatta (Rhesus monkey)
  ORGANISM  Macaca mulatta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from JV636177.1.
            
            On May 25, 2012 this sequence version replaced XM_001106266.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JV636177.1, JV062052.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4688330, SAMEA4688333
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1841
                     /organism="Macaca mulatta"
                     /mol_type="mRNA"
                     /db_xref="taxon:9544"
                     /chromosome="8"
                     /map="8"
     gene            1..1841
                     /gene="NKX3-1"
                     /note="NK3 homeobox 1"
                     /db_xref="GeneID:710591"
                     /db_xref="VGNC:VGNC:75355"
     CDS             41..739
                     /gene="NKX3-1"
                     /codon_start=1
                     /product="homeobox protein Nkx-3.1"
                     /protein_id="NP_001253152.1"
                     /db_xref="GeneID:710591"
                     /db_xref="VGNC:VGNC:75355"
                     /translation="
MLRATEPLPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRRGGHTDSPRRRDPEPEPEPEGGRGPAGVQNDQLSPRPRAAPEEAETLAETEPERHLGSYLLDCENTSGSLPSLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLVSLYNNYPYYPYLYCVGSWSPAFW"
     misc_feature    order(407..421,425..427,476..478,494..496,533..535,
                     539..544,551..556,560..568,572..577)
                     /gene="NKX3-1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    413..574
                     /gene="NKX3-1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(413..415,422..424,542..544,551..556,563..565)
                     /gene="NKX3-1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      
cgcggggctggcgcagcgaggccagaacggggcagccgggatgctcagggctacggagccgctgcccggggaggcgaaagcggagggggccgcgccgccaaccccgtccaagccgctcacgtccttcctcatccaggacatcctgcgggacggcgcgcagcggcgaggcggccacacggacagcccgagacggcgcgacccggagccagagccagagccggagggaggacgcggccccgccggggtacagaacgaccagctgagccccaggccccgcgccgcgccggaggaggccgagacgctggcggagacggagccagaaaggcacttggggtcttatctgttggactgtgaaaacacttcaggctcccttccaagcctcccccaaacccctaagcagccgcagaagcgctctcgagctgctttctcccacactcaggtgatcgagttggagaggaagttcagccatcagaagtacctgtcggcccctgaacgggcccacctggccaagaacctcaagctcacggagacccaagtgaagatatggttccagaacagacgctataagactaagagaaagcagctctcctcggagctgggagacttggagaagcactcctctttgccggctctgaaagaggaggccttctcccgggcctccctggtctccttgtataacaactatccttactacccatacctgtactgcgtgggcagctggagcccagctttttggtaatgccagctcaggtgacaaccatgtatgatcaaaaactgctttccccagggtgtggctatgaaaagcacaaggggccaaggtcagggagcaagaggtgtgcgcaacaaagctattggagatttctgtggaaatctcacatcttcactactgagacaatgaaacaacagagacagtgaacgttttaatatctaagtctgtcccccagtgcatactgtaggtcatttttttgcttctggctacctgtttgaaggggagagagggaaaatcaagtgctgttttcagctctttgcatgattttggaggaactgtacacgtgaggattctgttctacaactccatcctcctgtgtcactgaatatcaactctgaaagagcaaacctaacgggagaaaggacagccaggacgaggatgtcaccaactgaattaaacttaagtccagaagcctcctgttggccttggaatatggccaaggctctctctgtccctgtaaaagagtggggcaaatagagggtctccaagagaacaccctcatgcttagcacacatttgcatgggagggggagatgggtgggaggagatgaaaatatcagctgcttcttattcctttttattccttttaaaatggtatgccaacttaagtatttacagagtggcccaaatagaacaagatgcactggctgtgattttaagacaagctgtataaacagaactccactgcaagaggtggggccgtgccaggagaatctccacatgtccaagacaggagcctaaggagggtctccacactgctgctcgggactgttgcgttttttgttagcagaaagtggaaaggactctcctcaacttttttcttccagactggagaatttagaatcagaagtttcctggagttttcaggctatcatatatactgtatcctcagaggcaacatatttcttccttccctccttttacaattttttgttccttttttgcagcaattactcactaaagggcttcattttagtccagacttttagtctggctgcacctaacttatgcctcacgtatttagcctgagatcccgagatctggtcttttttttttttttttttttttttttg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]