2024-03-28 19:45:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001251129 1515 bp mRNA linear PLN 22-JUN-2021 DEFINITION Glycine max homeobox protein SBH1 (H1), mRNA. ACCESSION NM_001251129 VERSION NM_001251129.1 KEYWORDS RefSeq. SOURCE Glycine max (soybean) ORGANISM Glycine max Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja. REFERENCE 1 (bases 1 to 1515) AUTHORS Ma H, McMullen MD and Finer JJ. TITLE Identification of a homeobox-containing gene with enhanced expression during soybean (Glycine max L.) somatic embryo development JOURNAL Plant Mol Biol 24 (3), 465-473 (1994) PUBMED 7907232 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from L13663.1. ##Evidence-Data-START## Transcript exon combination :: L13663.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN16295013 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1515 /organism="Glycine max" /mol_type="mRNA" /db_xref="taxon:3847" /chromosome="9" /map="9" gene 1..1515 /gene="H1" /gene_synonym="Sbh1" /note="homeobox protein SBH1" /db_xref="GeneID:547796" exon 1..593 /gene="H1" /gene_synonym="Sbh1" /inference="alignment:Splign:2.1.0" misc_feature 141..143 /gene="H1" /gene_synonym="Sbh1" /note="upstream in-frame stop codon" CDS 156..1295 /gene="H1" /gene_synonym="Sbh1" /note="soybean homeobox-containing" /codon_start=1 /product="homeobox protein SBH1" /protein_id="NP_001238058.1" /db_xref="GeneID:547796" /translation="
MEGGSSSSNGTSYLLAFGENNSGGLCPMTMMPLVTSHHAGHHPINPSNNNNVNTNCLFIPNCSNSTGTPSIMLHNNHNNNKTDDDDNNNNTGLGYYFMESDHHHHHHGNNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMAGGDAAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFASNEGGDRNGSSEEDVDLHNMIDPQAEDRDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLGNPFPMDLSHPML"
misc_feature 378..530 /gene="H1" /gene_synonym="Sbh1" /note="propagated from UniProtKB/Swiss-Prot (P46608.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 522..641 /gene="H1" /gene_synonym="Sbh1" /note="KNOX1 domain; Region: KNOX1; pfam03790" /db_xref="CDD:397730" misc_feature 687..830 /gene="H1" /gene_synonym="Sbh1" /note="KNOX2 domain; Region: KNOX2; pfam03791" /db_xref="CDD:397731" misc_feature 936..1001 /gene="H1" /gene_synonym="Sbh1" /note="ELK domain; Region: ELK; pfam03789" /db_xref="CDD:397729" misc_feature 1056..1175 /gene="H1" /gene_synonym="Sbh1" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:399131" exon 594..849 /gene="H1" /gene_synonym="Sbh1" /inference="alignment:Splign:2.1.0" exon 850..1091 /gene="H1" /gene_synonym="Sbh1" /inference="alignment:Splign:2.1.0" exon 1092..1515 /gene="H1" /gene_synonym="Sbh1" /inference="alignment:Splign:2.1.0" ORIGIN
aataagagaattgtgtgtcgtgtttgtttttgtttggtttgttgtaaggttagctagtgagtattctacacaagggtggtggtagggcaaaaaggataagacagtgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgttgttgacaagcaaaagctatggagggtggtagtagtagctctaatggcacttcttatctgttggcttttggagaaaacaacagtggtgggctatgcccaatgacgatgatgcctttggtgacttcccatcacgctggtcatcatccaataaatcctagtaataataataatgtaaacacaaactgtctcttcattcccaactgcagtaacagtactggaactccttctatcatgctccacaataatcacaacaacaacaaaactgatgatgatgataacaacaacaacactgggttagggtactatttcatggagagtgaccaccaccaccatcaccacggcaacaacaacaacaatggaagctcctcctcctcctcctcttctgctgtcaaggccaagatcatggctcatcctcactatcaccgtctcttggcagcttacgtcaattgtcagaaggttggggccccgcctgaagtggtggcaaggttagaagaagcatgtgcttctgcagcgacaatggctggtggtgatgcagcagctggatcaagctgcataggtgaagatccagctttggatcagttcatggaggcttactgtgagatgctcacaaagtatgagcaagaactctccaaacccttaaaggaagccatgctcttccttcaaaggatcgagtgccagttcaaaaatcttacaatttcttcctccgactttgctagcaatgagggtggtgataggaatggatcgtctgaagaggatgttgatctacacaacatgatagatccccaggcagaggacagggatttaaagggtcagcttttgcgcaagtatagcggatacttgggcagtctgaagcaagaattcatgaagaagaggaagaaaggaaagctacctaaagaagcaaggcaacaattacttgaatggtggaacagacattacaaatggccttacccatccgaatcccagaagctggctcttgcagagtcgacaggtctggatcagaagcaaatcaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcagtttgtggtgatggatccaagccatccacactattacatggataatgttctaggcaatccatttcccatggatctttcccatcccatgctctagaaaattatccctcgtttgtgggctgctgataatagattcataaactcgtgctgtcacttattaaaaccttacaattattaatattaattaatatgcattctaagaaatcctagattgctatactataatatagtacgcaggtgtatcccttgctagctttttagacggtcctttgtgtggatcatctagttgaaggagttatgaataaataaaattccat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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