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2020-04-07 23:13:25, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       NM_001246413            2174 bp    mRNA    linear   PRI 21-SEP-2016
DEFINITION  Pan troglodytes claudin 11 (CLDN11), mRNA.
ACCESSION   NM_001246413 XM_003310097 XM_516873
VERSION     NM_001246413.1
KEYWORDS    RefSeq.
SOURCE      Pan troglodytes (chimpanzee)
  ORGANISM  Pan troglodytes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Pan.
REFERENCE   1  (bases 1 to 2174)
  AUTHORS   Kim RN, Kim DW, Choi SH, Chae SH, Nam SH, Kim DW, Kim A, Kang A,
            Park KH, Lee YS, Hirai M, Suzuki Y, Sugano S, Hashimoto K, Kim DS
            and Park HS.
  TITLE     Major chimpanzee-specific structural changes in sperm
            development-associated genes
  JOURNAL   Funct. Integr. Genomics 11 (3), 507-517 (2011)
   PUBMED   21484476
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK306887.1.
            On or before Oct 10, 2011 this sequence version replaced
            XM_516873.3, XM_003310097.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK306887.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01120800, SAMN01120804
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2174
                     /organism="Pan troglodytes"
                     /mol_type="mRNA"
                     /db_xref="taxon:9598"
                     /chromosome="3"
                     /map="3"
     gene            1..2174
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /note="claudin 11"
                     /db_xref="GeneID:460846"
                     /db_xref="VGNC:VGNC:1780"
     misc_feature    164..166
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /note="upstream in-frame stop codon"
     CDS             200..823
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /note="claudin 11 (oligodendrocyte transmembrane protein)"
                     /codon_start=1
                     /product="claudin-11"
                     /protein_id="NP_001233342.1"
                     /db_xref="GeneID:460846"
                     /db_xref="VGNC:VGNC:1780"
                     /translation="
MVATFLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQLAGVLLILLALCALVATIWFPVCAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILCCAGDAQAFGENRFYYTAGSSSPTHAKSAHV"
     misc_feature    215..715
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:328820"
ORIGIN      
agcgctgctgtcgccgccgtgcgcccttcgccgctgagctcgcagcctccggcgcccacctccacctccagtgtcccgcctcgggccgtcgccctccagcggctcgcgagcgtgggagacgtacctgggcaggcactgtccagcccaggcccaggcacagccgtgaggggcgaggcacggggacatcctggcggccaccatggtggccacgtttctgcaggtggtgggcttcgtcacgagcttcgtgggctggatcggcgtcatcgtgaccacctccaccaatgactgggtggtgacctgcggctacaccatccccacctgccgcaagctggatgagctgggctccaaggggctgtgggccgactgcgtcatggccacggggctgtaccactgcaagcccctggtggacatcctcatcctgccgggctacgtgcaggcctgccgcgccctgatgattgctgcctcggtcctgggtctgccggccattttactgctgctgactgttcttccctgcatccggatgggccaggagcccggtgtggctaagtacaggcgggcccagctggctggtgttttgctcattctgctggctctctgcgcccttgttgccaccatctggttccctgtgtgcgcccaccgtgagaccaccatcgtgagctttggctactccctgtatgcaggctggattggtgctgtgctgtgcctcgtgggtggctgtgtcatcctctgctgtgctggagatgcccaggcctttggtgaaaaccgtttctactacactgcgggctctagctccccgactcatgcgaagagtgcccacgtataagagggctgcccggctgcccacagaggtgctgtagatgctgggcccagggccctaggtttgctcgtcacagtgtggggaagcccattcctctgccaggctctaaagccaaaggtctagaaaagcatcctgtctggcattttgtagtcttaacttctccccatttcccccatcttttggttgccttaaaagaaatctctagctcagataatgcccagacatttttttcccatggtgttgccactattagctcttttcttgggcattcttttgctgtttattaaaaatatattatatatattttgtttctttaaatttcaaatgttttgcaaacatcactgagttaggtgggggtggggaagagaaatacaagacacttttttttttttttttttttttttaaatagggccttactctgttgctcaggctggagtgcggtggtgtgatctcggctcatgtagcctcaacctccctggctcaagtgatcctcctgcctcagcctcccaagtagctgggactacaggcgttcactactacacccagctaatttttaagttttttgtagagatgagggctccctatgttgcccaggttggtctggaactcctggactcaaagtatcctcccgcctcggcctcccaaagtgttgggattataggagtgagccaccacaccggccaagatgcttttcaaactgatacagatgacaatgggagcctcataaagatggcttttgtttcttcccttcaaggtcatttacttgtacgagacagaaaaagatagcattggggacatgggatgagggagggagggcaatagtggaacgaactttccatgggaaactttcccttttgtaagttgagggccaggggtagggatattttttagtttgtgattttgcatttatctgtacatactttttcaagattgatcatttttataaccatggttttcctgaaatcctcagttcatcaatatgaaggaaatgaaccacatagactttatgcaataaataacagtgcaagtgagtataactttaactgatgttccacaaaacatttttgatttcaggtttatatgatgtagtttttaatcgtacattttcatatgcttcaaactaacacatttttaaagctttcccccacttttctctctatttgcattgttagccatcttgaagtgatgttgtttaacataagttgtactgttgaatttggctttacgggtgtaaacactgatggtatatcagtatctgagaccccagactctccaaatactgatggtgcattttattcttgaagtgaaatctgtgcaataaaataacagactgtctgcaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]