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2024-03-29 23:47:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001195160             636 bp    mRNA    linear   VRT 03-NOV-2020
DEFINITION  Oncorhynchus mykiss claudin 28b (LOC100499582), mRNA.
ACCESSION   NM_001195160
VERSION     NM_001195160.1
KEYWORDS    RefSeq.
SOURCE      Oncorhynchus mykiss (rainbow trout)
  ORGANISM  Oncorhynchus mykiss
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, Noel B,
            Bento P, Da Silva C, Labadie K, Alberti A, Aury JM, Louis A, Dehais
            P, Bardou P, Montfort J, Klopp C, Cabau C, Gaspin C, Thorgaard GH,
            Boussaha M, Quillet E, Guyomard R, Galiana D, Bobe J, Volff JN,
            Genet C, Wincker P, Jaillon O, Roest Crollius H and Guiguen Y.
  TITLE     The rainbow trout genome provides novel insights into evolution
            after whole-genome duplication in vertebrates
  JOURNAL   Nat Commun 5, 3657 (2014)
   PUBMED   24755649
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Sandbichler AM, Egg M, Schwerte T and Pelster B.
  TITLE     Claudin 28b and F-actin are involved in rainbow trout gill pavement
            cell tight junction remodeling under osmotic stress
  JOURNAL   J Exp Biol 214 (Pt 9), 1473-1487 (2011)
   PUBMED   21490256
REFERENCE   3  (bases 1 to 636)
  AUTHORS   Salem M, Rexroad CE 3rd, Wang J, Thorgaard GH and Yao J.
  TITLE     Characterization of the rainbow trout transcriptome using Sanger
            and 454-pyrosequencing approaches
  JOURNAL   BMC Genomics 11, 564 (2010)
   PUBMED   20942956
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU921670.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU921670.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Oncorhynchus mykiss"
                     /mol_type="mRNA"
                     /db_xref="taxon:8022"
                     /chromosome="Y"
                     /map="Y"
     gene            1..636
                     /gene="LOC100499582"
                     /note="claudin 28b"
                     /db_xref="GeneID:100499582"
     CDS             1..636
                     /gene="LOC100499582"
                     /codon_start=1
                     /product="claudin 28b"
                     /protein_id="NP_001182089.1"
                     /db_xref="GeneID:100499582"
                     /translation="
MVSAGLQMLGTALAIIGWLGSIIICALPMWKVTAFIGANIVTAQVIWEGLWMNCVTQSTGQMQCKVYDSLLALPQDLQAARALIIIAIIAGVFAILLGIAGGKCTNFVDNERSKAKVAIASGVVFLIAALLVLVPVCWSANTIIRDFYNPLLVEAQRRELGASLYIGWGSAGLMILGGALLCCSCPPKDENHNVKYSKAASSVAGSSKAYV"
     misc_feature    13..543
                     /gene="LOC100499582"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     exon            1..636
                     /gene="LOC100499582"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atggtgtcagctgggttacagatgctgggcacggccctggcgatcatcggctggctgggaagcatcatcatctgtgctctgcccatgtggaaggtgacagctttcatcggagccaacatcgtcaccgctcaggtcatctgggaagggttatggatgaactgtgtgacccagagcacgggacagatgcagtgtaaggtctacgactccctcctggccttacctcaggacctgcaggccgccagagctctgatcataatcgccataattgccggcgtgttcgccatcctgctgggcatcgccggcgggaagtgcaccaacttcgtggataacgagaggtccaaggccaaggtagccatcgctagcggggtcgtcttcctcattgctgcccttctggttctggtccctgtctgctggtcggccaacaccatcatccgagacttctacaacccccttttggtcgaggcccagagaagggagctgggagcctcactctacatcggctggggctccgcagggctgatgatcctgggcggggcgctcctctgctgctcctgcccccccaaagatgagaaccacaatgtcaagtactccaaggctgctagttctgtggctggcagcagcaaggcctacgtctag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]