2024-03-29 23:47:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001195160 636 bp mRNA linear VRT 03-NOV-2020 DEFINITION Oncorhynchus mykiss claudin 28b (LOC100499582), mRNA. ACCESSION NM_001195160 VERSION NM_001195160.1 KEYWORDS RefSeq. SOURCE Oncorhynchus mykiss (rainbow trout) ORGANISM Oncorhynchus mykiss Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus. REFERENCE 1 (bases 1 to 636) AUTHORS Berthelot C, Brunet F, Chalopin D, Juanchich A, Bernard M, Noel B, Bento P, Da Silva C, Labadie K, Alberti A, Aury JM, Louis A, Dehais P, Bardou P, Montfort J, Klopp C, Cabau C, Gaspin C, Thorgaard GH, Boussaha M, Quillet E, Guyomard R, Galiana D, Bobe J, Volff JN, Genet C, Wincker P, Jaillon O, Roest Crollius H and Guiguen Y. TITLE The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates JOURNAL Nat Commun 5, 3657 (2014) PUBMED 24755649 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 636) AUTHORS Sandbichler AM, Egg M, Schwerte T and Pelster B. TITLE Claudin 28b and F-actin are involved in rainbow trout gill pavement cell tight junction remodeling under osmotic stress JOURNAL J Exp Biol 214 (Pt 9), 1473-1487 (2011) PUBMED 21490256 REFERENCE 3 (bases 1 to 636) AUTHORS Salem M, Rexroad CE 3rd, Wang J, Thorgaard GH and Yao J. TITLE Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches JOURNAL BMC Genomics 11, 564 (2010) PUBMED 20942956 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU921670.1. ##Evidence-Data-START## Transcript exon combination :: EU921670.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..636 /organism="Oncorhynchus mykiss" /mol_type="mRNA" /db_xref="taxon:8022" /chromosome="Y" /map="Y" gene 1..636 /gene="LOC100499582" /note="claudin 28b" /db_xref="GeneID:100499582" CDS 1..636 /gene="LOC100499582" /codon_start=1 /product="claudin 28b" /protein_id="NP_001182089.1" /db_xref="GeneID:100499582" /translation="
MVSAGLQMLGTALAIIGWLGSIIICALPMWKVTAFIGANIVTAQVIWEGLWMNCVTQSTGQMQCKVYDSLLALPQDLQAARALIIIAIIAGVFAILLGIAGGKCTNFVDNERSKAKVAIASGVVFLIAALLVLVPVCWSANTIIRDFYNPLLVEAQRRELGASLYIGWGSAGLMILGGALLCCSCPPKDENHNVKYSKAASSVAGSSKAYV"
misc_feature 13..543 /gene="LOC100499582" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 1..636 /gene="LOC100499582" /inference="alignment:Splign:2.1.0" ORIGIN
atggtgtcagctgggttacagatgctgggcacggccctggcgatcatcggctggctgggaagcatcatcatctgtgctctgcccatgtggaaggtgacagctttcatcggagccaacatcgtcaccgctcaggtcatctgggaagggttatggatgaactgtgtgacccagagcacgggacagatgcagtgtaaggtctacgactccctcctggccttacctcaggacctgcaggccgccagagctctgatcataatcgccataattgccggcgtgttcgccatcctgctgggcatcgccggcgggaagtgcaccaacttcgtggataacgagaggtccaaggccaaggtagccatcgctagcggggtcgtcttcctcattgctgcccttctggttctggtccctgtctgctggtcggccaacaccatcatccgagacttctacaacccccttttggtcgaggcccagagaagggagctgggagcctcactctacatcggctggggctccgcagggctgatgatcctgggcggggcgctcctctgctgctcctgcccccccaaagatgagaaccacaatgtcaagtactccaaggctgctagttctgtggctggcagcagcaaggcctacgtctag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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