2024-03-29 20:19:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001194564 1820 bp mRNA linear PRI 11-JUL-2020 DEFINITION Macaca mulatta claudin 4 (CLDN4), mRNA. ACCESSION NM_001194564 XM_001112477 VERSION NM_001194564.3 KEYWORDS RefSeq. SOURCE Macaca mulatta (Rhesus monkey) ORGANISM Macaca mulatta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. REFERENCE 1 (bases 1 to 1820) AUTHORS Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F, Cooper DN, Li Q, Li Y, van Gool AJ, Du H, Chen J, Chen R, Zhang P, Huang Z, Thompson JR, Meng Y, Bai Y, Wang J, Zhuo M, Wang T, Huang Y, Wei L, Li J, Wang Z, Hu H, Yang P, Le L, Stenson PD, Li B, Liu X, Ball EV, An N, Huang Q, Zhang Y, Fan W, Zhang X, Li Y, Wang W, Katze MG, Su B, Nielsen R, Yang H, Wang J, Wang X and Wang J. TITLE Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques JOURNAL Nat. Biotechnol. 29 (11), 1019-1023 (2011) PUBMED 22002653 REMARK Publication Status: Online-Only COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from QNVO02000311.1. On Jun 20, 2019 this sequence version replaced NM_001194564.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript is intronless :: SRR3476739.265954.1, JV642619.1 [ECO:0000345] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1820 QNVO02000311.1 420734-422553 c FEATURES Location/Qualifiers source 1..1820 /organism="Macaca mulatta" /mol_type="mRNA" /db_xref="taxon:9544" /chromosome="3" /map="3" gene 1..1820 /gene="CLDN4" /gene_synonym="claudin-4" /note="claudin 4" /db_xref="GeneID:716808" /db_xref="VGNC:VGNC:80864" exon 1..1820 /gene="CLDN4" /gene_synonym="claudin-4" /inference="alignment:Splign:2.1.0" misc_feature 335..337 /gene="CLDN4" /gene_synonym="claudin-4" /note="upstream in-frame stop codon" CDS 341..970 /gene="CLDN4" /gene_synonym="claudin-4" /codon_start=1 /product="claudin-4" /protein_id="NP_001181493.1" /db_xref="GeneID:716808" /db_xref="VGNC:VGNC:80864" /translation="
MASMGLQVTGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCKVYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESAKAKTMIVAGVVFLLAGLLVIVPVSWTAHNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGGLLCCNCPPRTDKPYSAKYSAARSAAASNYV"
misc_feature 350..850 /gene="CLDN4" /gene_synonym="claudin-4" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
aaaagtgcctttgttggcctgggctcaggaatccagagaaactggtcaggaggaggtcccggtgatgaaaacccctccctctgcccccgcccctctgccagagccatataactgctcaacctgtcctgagagagagagtgccctggcagctgtcggctggaaggaactggtctgctcacactcgctggcttgtgcatcaggactggctttttctcctgactcacagcgcaaaggagctctctgtgaacgttaagtccgtccccagcgcttggaatcctacggcctcctcagccggatcccctcagccttccaggtcctcaacctccgcggacgctgagcgatggcctccatggggctacaggtgacgggcatcgcgctggccgtcctgggctggctggccgtcatgctgtgctgcgcgctgcccatgtggcgcgtgacggccttcatcggcagcaacatcgtcacctcgcagaccatctgggagggcctgtggatgaactgcgtggtgcagagcaccggccagatgcagtgcaaggtgtacgactcgctgctggcgctgccgcaggacctgcaggcggcccgcgccctcgtcatcatcagcatcatcgtggccgctctgggcgtgctgctgtccgtggtggggggcaagtgtacaaactgcctggaggatgagagtgccaaggccaagaccatgatcgtggcgggtgtggtgttcctgttggccggcctgctggtgatagtgcccgtgtcctggacggcccacaacatcatccaagacttctacaacccgctggtggcctccgggcagaagcgggagatgggtgcctcgctctacgtcggctgggctgcctccggcctgctgctgcttggcggggggctgctttgctgcaactgcccaccccgcacagacaagccttactctgccaagtattctgccgcccgctctgctgctgccagcaactacgtgtaaggtgccacggctccactctgtccctctctgctttgttcttccctggactgagctcagcacaggctgtgaccccaggagggccctgccacgggcccctggctgctggggactggggactgggcagagactgagccaggcaggaaggcagcagccttcagcctctctggcccattcggacaccttcccaaggccgcctcctgctagcaagaacagagtccaccctcctctggatattgtggagggacggaagtgacagggtgtggcagtggagtggggagctggcttctgctggccaggatggctcaaccgtgactttgggctctgcctgcatcggtgttggccactgtccccatttacattttccccactctgtctgcctgcatctcctctgttccgggcaggccttgatgtcacctctaggactgtgccttgctcaccgaaacccgcacccaggagtatggctgaggccttgcccacccacctgcctgaggagggcagagtggatggacgggtttggaggggaggggtgaaggctttgtaaacaggtttgggcagtggtgggggagggggccagagaggccgctcaggctgcccagctctgtggcctcaggactctgcctcacccacttcagccctgggccactggagactgatccccctgagtcctctgcccctgccaaggacactaaccagcctgggagggtggcagggaggaggggcggcttcaccctcgggagtcctggggttcttcctcctccttcttcgtggtttctgttttgtaatttaagaagatctattcatcactgtaattattattattttctacaataaatggaacctgtgcacagga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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