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2020-04-06 09:47:30, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       NM_001193969            2080 bp    mRNA    linear   PRI 12-DEC-2019
DEFINITION  Macaca mulatta claudin 1 (CLDN1), mRNA.
ACCESSION   NM_001193969 XM_001093143
VERSION     NM_001193969.1
KEYWORDS    RefSeq.
SOURCE      Macaca mulatta (Rhesus monkey)
  ORGANISM  Macaca mulatta
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S,
            Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Marcais G,
            Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA
            and Norgren RB Jr.
  TITLE     A new rhesus macaque assembly and annotation for next-generation
            sequencing analyses
  JOURNAL   Biol. Direct 9 (1), 20 (2014)
   PUBMED   25319552
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  AUTHORS   Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F, Cooper DN, Li Q, Li
            Y, van Gool AJ, Du H, Chen J, Chen R, Zhang P, Huang Z, Thompson
            JR, Meng Y, Bai Y, Wang J, Zhuo M, Wang T, Huang Y, Wei L, Li J,
            Wang Z, Hu H, Yang P, Le L, Stenson PD, Li B, Liu X, Ball EV, An N,
            Huang Q, Zhang Y, Fan W, Zhang X, Li Y, Wang W, Katze MG, Su B,
            Nielsen R, Yang H, Wang J, Wang X and Wang J.
  TITLE     Genome sequencing and comparison of two nonhuman primate animal
            models, the cynomolgus and Chinese rhesus macaques
  JOURNAL   Nat. Biotechnol. 29 (11), 1019-1023 (2011)
   PUBMED   22002653
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            QNVO02000282.1.
            On Aug 11, 2010 this sequence version replaced XM_001093143.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JV635805.1, JV045368.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4688315, SAMEA4688322
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-492               QNVO02000282.1     1830441-1830932     c
            493-657             QNVO02000282.1     1821316-1821480     c
            658-742             QNVO02000282.1     1818633-1818717     c
            743-2080            QNVO02000282.1     1815570-1816907     c
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Macaca mulatta"
                     /mol_type="mRNA"
                     /db_xref="taxon:9544"
                     /chromosome="2"
                     /map="2"
     gene            1..2080
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /note="claudin 1"
                     /db_xref="GeneID:704330"
                     /db_xref="VGNC:VGNC:71242"
     exon            1..492
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    159..161
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /note="upstream in-frame stop codon"
     CDS             270..905
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /codon_start=1
                     /product="claudin-1"
                     /protein_id="NP_001180898.1"
                     /db_xref="GeneID:704330"
                     /db_xref="VGNC:VGNC:71242"
                     /translation="
MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGVIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDYV"
     misc_feature    282..788
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; pfam00822"
                     /db_xref="CDD:250157"
     exon            493..657
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /inference="alignment:Splign:2.1.0"
     exon            658..742
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /inference="alignment:Splign:2.1.0"
     exon            743..2080
                     /gene="CLDN1"
                     /gene_synonym="claudin-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
ctttaaatcgcggcgcccagcggtttggcgtctcagttcctgagcctgggagcaaccgcagcttctagtatccagactccagcgccgcccgggccccggaccccagcccggacccagagcttctccagcggcggcgcagcgagcagggctccccgctttaacttcctccgcggggcccagccaccttcgggagcccgcgttgcgcacctgcaaactctctgccttctgcacctgccacccctgagccagcgcgggcggccgagcgagtcatggccaacgcggggctgcagcttttgggcttcattctcgccttcctgggatggatcggcgccatcgtcagcactgccctgccccagtggaggatttactcctatgccggcgacaacatcgtgaccgcccaggccatgtacgaggggctgtggatgtcctgcgtgtcgcagagcaccgggcagatccagtgcaaagtctttgactccttgctgaatctgagcagcacattgcaagcaacccgtgccttgatggtggttggcatcctcctgggagtgatagcaatctttgtggccaccgttggcatgaagtgtatgaagtgcttggaagacgatgaggtacagaagatgaggatggctgtcattgggggcgtgatatttcttcttgcaggtctggctattttagttgccacagcatggtatggcaatagaattgttcaagaattctatgaccccatgaccccagtcaatgccaggtacgaatttggtcaggctctcttcactggctgggctgctgcttctctctgccttctgggaggtgccctactttgctgttcctgtcctcgaaaaacaacttcatacccaacaccacggccctatccaaaacctgcaccttccagtgggaaagactacgtgtgacacagaggcaaaaggagacaatcatgttggaacaaactgaaaatggacattgagatactatcattaacattaggaccttagacttttgagtattgcaatctgaagtatggtattacaaaacaaacaaagaaacccatgtgttaaaaatacctattgctaaacatggcttagtcttattttatcttctttcctcaatacaggagggaagatttttccatttgtattactgcttcccattgagtaatcatactcaaatgggggaagggggtgctcttaaatatatatagatgtgtatatatacatgtttttctattaaaaatagacagtaaaatactcttctcattatgttgatactagcatacttaaaatatctctaaaaataggtaaatgtatttaattccatattgatgaaaatgtttattggtatattttttttgtttatgtatacatatataatagtcaaatatcatttactcttcttcattagcttttagtgtctttgccataagacctagtctaatctaccaagaatgaattctttcaattcttcatgcgtgcccttttcatatacttattttattttttaccataatcttatagcacttgcatcgttattaagcccttatttgttttgtgtttcattggtctctatctcctgaagctaacacatttcatagtctacattttagtttctaaagccaataagaatttattacaaatcagaactttggaggcaaatctttctgcatgaccaaagtgataaattcctgttgaccttcccacacagtcctcgtactctgacccatagcattcttgtttgctttgaaaatatttgtccaattgagtagctgcatgctgttcacccaggtgttgtaacacaattttatggattgaattatgaagctacttattcatacttatatatcccacctaaactacctttttgttccccttccttaattgtattgttttcccacatgtaattatcatgtagtttatatcttcctaataaggtgtggtctgtttgtctgaacaaaatgctagactttctggagtgataagctggtgacaaatattctctctgcagctgtaagcaagtcacttaatctttctacctcttttttctatctgccaaattgagataatgatttaaccagttagaagaggtagtgtga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]