2024-04-20 18:26:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001169064 1332 bp mRNA linear PRI 23-AUG-2020 DEFINITION Papio anubis homeobox A3 (HOXA3), mRNA. ACCESSION NM_001169064 VERSION NM_001169064.1 KEYWORDS RefSeq. SOURCE Papio anubis (olive baboon) ORGANISM Papio anubis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio. COMMENT INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from DP000507.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN02045697, SAMN02045698 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1332 /organism="Papio anubis" /mol_type="mRNA" /db_xref="taxon:9555" /chromosome="4" /map="4" gene 1..1332 /gene="HOXA3" /note="homeobox A3" /db_xref="GeneID:100137569" CDS 1..1332 /gene="HOXA3" /codon_start=1 /product="homeobox protein Hox-A3" /protein_id="NP_001162535.1" /db_xref="GeneID:100137569" /translation="
MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASVALGADGEYHRPACSLQSPSSAGGHPKAHELSDACLRSLSAPPSQPPSLGEPPLHPPPTQAAPPAPQPPQPPPQPPAPTSAAPPPPSSVSPPQNASSNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTAHHPSQGRIQEAPKLTHL"
misc_feature order(574..588,592..594,643..645,661..663,700..702, 706..711,718..723,727..735,739..744) /gene="HOXA3" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(580..582,589..591,709..711,718..723,730..732) /gene="HOXA3" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 583..741 /gene="HOXA3" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 1129..1323 /gene="HOXA3" /note="Domain of unknown function (DUF4074); Region: DUF4074; pfam13293" /db_xref="CDD:433094" exon 1..526 /gene="HOXA3" /inference="alignment:Splign:2.1.0" exon 527..1332 /gene="HOXA3" /inference="alignment:Splign:2.1.0" ORIGIN
atgcaaaaagcgacctactacgacagctcggcgatctacggtggctacccctaccaggcagccaacgggttcgcttataatgccaatcagcagccgtacccggcgtccgtcgctttgggtgccgacggcgagtaccatcgacccgcctgctccctccagtctccctccagcgccggaggccaccccaaggcacacgaactgagtgacgcgtgcctgcgcagcctgagcgccccacctagccagcctccaagcctgggcgagccgcccctgcacccgccgccgacccaggccgcgccccctgccccacagccgcctcagcccccacctcagccccctgcacctacctctgccgcgcccccgcctccctcttctgtctccccacctcagaatgccagcagcaaccccacccccgccaacgcggccaagagccccctgctcaactcacccacagtggccaaacaaatcttcccctggatgaaagagtctcgacaaaacacaaagcagaaaaccagcagctctagctcaggcgagagctgcgctggcgacaagagcccgccggggcaggcttcgtccaagcgcgcgcgcacggcctacacgagtgcgcagctggtggagctggaaaaagagttccacttcaaccgctacctgtgccggccgcgccgggtggagatggccaatctgctgaacctcactgagcgccagatcaagatctggttccagaatcgccgcatgaagtacaaaaaggatcagaagggcaagggcatgctaacctcatcggggggccagtctccaagtcgcagtcccgtgccccccggcgccggtggctatctgaactctatgcattcgttggtcaacagcgtcccgtacgagccccagtcgcccccgcccttctccaagcccccccagggtacctacgggctgccccccgcctcctaccctgcatccctgcccagctgtgcacccccaccacccccacagaagcgctacacggcggcaggggcgggcgcagggggcacccccgactatgacccgcacgctcatggcctgcagggcaacggcagctatgggaccccacacatacagggaagccccgtcttcgtggggggcagctacgtggagcccatgagcaactctgggccagccctctttggtctaactcacctcccccacgctgcctcgggcgccatggactatgggggcgccgggccgctgggcagcggccaccaccacgggcccgggcctggggagccgcaccccacctacacggaccttactgcccaccatccttctcagggaagaattcaggaagcacccaagctcacccacctgtga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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