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2019-03-21 16:39:56, GGRNA.v2 : RefSeq release 92 (Jan, 2019)

LOCUS       NM_001165009            1821 bp    mRNA    linear   INV 18-APR-2013
DEFINITION  Saccoglossus kowalevskii dorsal root ganglia homeobox (drgx), mRNA.
ACCESSION   NM_001165009
VERSION     NM_001165009.1
KEYWORDS    RefSeq.
SOURCE      Saccoglossus kowalevskii
  ORGANISM  Saccoglossus kowalevskii
            Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae;
            Saccoglossus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU939741.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU939741.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Saccoglossus kowalevskii"
                     /mol_type="mRNA"
                     /db_xref="taxon:10224"
     gene            1..1821
                     /gene="drgx"
                     /note="dorsal root ganglia homeobox"
                     /db_xref="GeneID:100303573"
     misc_feature    258..260
                     /gene="drgx"
                     /note="upstream in-frame stop codon"
     CDS             357..1343
                     /gene="drgx"
                     /note="dorsal root ganglion homeobox protein"
                     /codon_start=1
                     /product="dorsal root ganglia homeobox"
                     /protein_id="NP_001158481.1"
                     /db_xref="GeneID:100303573"
                     /translation="
MFCYHCPIPAASYPYFEQRVPTGNNAPLPSVVPPIFSTSSYANHHEFDDTFLRRKQRRNRTTFTAQQLEELESAFGRTHYPDVFTREDLAVKINLTEARVQVWFQNRRAKWRKTEKGRPDETRDSENDRPISVDEDSDTTNVQEQTNFEIATDNPVCKEDDHLDEQLASVSPTLKSAPLLWKPGRVSSPVGSCDFPVEDNDKYCKADSRSSTPTEQSDNDACEGRLAERDITPGDVMKSTSDDTLRRDTYNNKCTSPVVKVSSLGTAAINSPQLQAECQSKFLSLYSPYHVPVQHKTSSVAELRQKAKDYTNALMGAMLYNRNGFSPR"
     misc_feature    order(525..539,543..545,594..596,612..614,651..653,
                     657..662,669..674,678..686,690..695)
                     /gene="drgx"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(531..533,540..542,660..662,669..674,681..683)
                     /gene="drgx"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    534..692
                     /gene="drgx"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:278475"
ORIGIN      
agacaaggggaatgcttcgagcgattcatcataaacaactgcgtattctagcaaagccataatatcttcgttttctttatatattgtcatttcaagaggagctgtgttcctgtgcgtatctgcattagatattatactttcgctgtcgtcttggtaacagatggacgcatatggtgttgcattgtgggatatgctaattcagaattcagaagtagagctgtcaacttaatcttattggtggagatagtagcggttgctgattagaaagaggctgtccaaacttcaacttcaatcgacgcactgccacgcacaaggccggatactctatacgcgacccaaacccgtccgtcgccaacatgttctgttatcattgtccgattcccgctgctagctacccgtattttgagcaacgagtgccgacagggaataatgctcctctaccttctgtcgtgccgcctatattttcgacatcatcttacgcaaaccaccatgaatttgatgacactttcttgcgtaggaaacagcgcagaaacaggaccacgtttacagcccagcagctggaagaattagaatcggcatttggcaggacacattacccggatgtattcacgcgagaagacctcgcagtcaaaatcaacctaacagaggcacgtgtacaggtttggttccaaaataggcgagcgaaatggcgaaaaaccgagaagggccgcccagacgaaacacgtgatagcgaaaacgatagaccgatttctgtggacgaggacagtgacactacaaacgtccaagagcaaacgaactttgaaattgcaactgacaaccctgtatgtaaagaagacgatcacctagacgaacaactagcaagtgtttcccccaccctaaaatcagctccattactatggaaaccaggaagagtatcatctccagtcgggtcatgtgatttccccgtggaagacaatgacaaatattgtaaagcggactcaagatctagtacaccgaccgagcagagcgacaatgatgcatgtgaaggtagattggcagaaagagatatcactcccggtgacgtaatgaaatctaccagtgatgatactctacgaagagatacttacaacaataaatgcacgtcgcctgtggtgaaagtatcgtcgttagggacggcagccattaactcgccacaactacaagcagagtgtcaatcaaaatttctttcgctatactcgccttatcacgtgccagttcagcacaaaacatcaagcgtcgctgaacttcgccagaaagccaaggattacacaaatgctctgatgggtgctatgttatataatcgcaatgggttctccccgcggtaacaaacattacgtcatctttacactgctagcatagtgacatgtcaggagtttcttttaatctttttcttatacatggatgaaaaatcacgtgtggtcatacctaacttatggcgcttatgatatcaccgtctttatgtcatctctcttcgcacaacctaattcagtacttactgcaatacgagaagcagtaacacttttattcaaatttgttgtcgtatatttgttttctgatttcatatcaaactcggatgttgcgtcgcttatgcttacgccgtctggccgtttcacgcttaaaataaaagatgttcgtctttggaacactgctgtaaatattctattaaataactttcagcaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]