2024-04-20 18:55:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001164940 2551 bp mRNA linear INV 04-MAY-2019 DEFINITION Saccoglossus kowalevskii homeobox 9/10 (hox9/10), mRNA. ACCESSION NM_001164940 VERSION NM_001164940.1 KEYWORDS RefSeq. SOURCE Saccoglossus kowalevskii ORGANISM Saccoglossus kowalevskii Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus. REFERENCE 1 (bases 1 to 2551) AUTHORS Aronowicz J and Lowe CJ. TITLE Hox gene expression in the hemichordate Saccoglossus kowalevskii and the evolution of deuterostome nervous systems JOURNAL Integr. Comp. Biol. 46 (6), 890-901 (2006) PUBMED 21672793 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ985451.1. ##Evidence-Data-START## Transcript exon combination :: DQ985451.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2551 /organism="Saccoglossus kowalevskii" /mol_type="mRNA" /db_xref="taxon:10224" gene 1..2551 /gene="hox9/10" /note="homeobox 9/10" /db_xref="GeneID:100303540" exon 1..173 /gene="hox9/10" /inference="alignment:Splign:1.39.8" exon 174..269 /gene="hox9/10" /inference="alignment:Splign:1.39.8" exon 270..1098 /gene="hox9/10" /inference="alignment:Splign:1.39.8" misc_feature 342..344 /gene="hox9/10" /note="upstream in-frame stop codon" CDS 348..1367 /gene="hox9/10" /codon_start=1 /product="homeobox 9/10" /protein_id="NP_001158412.1" /db_xref="GeneID:100303540" /translation="
MTTAGSAFCVNSLISSEENEALLRNPADIPSAGNQPIDSKCGLLIPKTTEPAMASAAAQGMSLHSSSANLYPSGGDQNTYTNAWYYPSTEQNYASMQVTGLHDTEYDSNPYGFSIGAQKNYDSSSLMSSNSNFYPFQARQGYDRYHTNGYPTTNGTGIHHVEYGNLKYNTITQRQRYSGSYPYENTNSYSSPMSSSSSSACRLQNSKTNLAATSPTSTGSESRSPAKSEGSPIGTNNNNNSTNSTTPKTEVTRNSPSDIGDQPTWLTTTASGRKKRCPYTKFQTLELEKEFLFNMYLTRERRVDIARLLNLTERQVKIWFQNRRMKLKKQNQRNATMLH"
misc_feature order(1164..1178,1182..1184,1233..1235,1251..1253, 1290..1292,1296..1301,1308..1313,1317..1325,1329..1334) /gene="hox9/10" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 1170..1331 /gene="hox9/10" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(1170..1172,1179..1181,1299..1301,1308..1313, 1320..1322) /gene="hox9/10" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1099..2525 /gene="hox9/10" /inference="alignment:Splign:1.39.8" ORIGIN
ccaagacttgcttaaccgacgactacccagtgcgcagacgacaccatagctgagtcagtcccatgctttaacgcacgcggcttattttaagtgtttaaaggctgattcgggaggcgacgtgtttctatagaaaccaggtaggaaccccgccgtgtcagtgcacataaggacagtatcgcgagtttggctacagtactcgccgtcgctacattctcgaaaatatgtgttcaagaaaggtcattttagttcgttccattcgattgcttcggggtcatctgcagttttatcactagtgacactgtattgactggctttaccgtggtgaatatacgaggcgaacataaaaaatgacaacagcgggttcggctttttgtgtgaattctctcatcagctcggaggagaacgaagcattgctgcggaatccggctgacatcccgtcggcagggaaccagccgatcgactcaaaatgtggactgctaatccccaaaacaacggagccggcgatggcatctgcagccgcccagggaatgagcctgcactcgtcttcagcaaatctgtacccgagcggcggcgatcaaaacacctatacgaacgcctggtactacccgagcacggagcagaactatgcctcgatgcaagtgactggacttcacgatacagagtacgactcaaatccctacggattttcaattggagcacagaaaaactatgactccagttccctgatgtcgtccaactcaaatttctacccgtttcaggcgaggcaaggatacgatcgctaccatacgaatggatacccgacaaccaacggaacagggatacaccacgtcgagtacggaaatctcaagtacaacacgataacacagagacagcgatattcgggttcatatccgtatgaaaacaccaattcttactcgtcgccaatgtcttcgtcctcttcgtcagcgtgtcgactccagaactcaaagacaaacttggcagctacgagtccaaccagtactggcagtgaaagccgctcgccagccaaaagcgaaggtagccccatcggcaccaataataacaacaacagcaccaattctacaacaccgaaaacagaagtgaccagaaattcaccgtctgatattggcgaccaacctacgtggttgacaacgacagcttctgggcgcaaaaagagatgtccctacaccaaattccaaacactcgagttggagaaggagttcttattcaacatgtacctaacgcgagagcgaagggtggatatcgcgagattactgaacctgaccgaacgacaggtcaaaatttggttccaaaatagaaggatgaaattgaagaagcagaaccaacgaaatgccactatgcttcactaattatcaaagacattgttaaactttgaactttgaactatttagtattacttccggcgttgctggatgactcgctctgatgtttgaattccggtgtcggtgcgcaaatgtcttctaaacacmccgtgtgcacgcatgccatatttgtcacatgacgaacgctggaacgagataaactattcagtataacgcagtcgtataacaatgaacagaatgtgcgtggagttgccatggtgatgtaaaatgaacttattttaaagtgatgtttttcctgcatatttaaaaaaaacctacatggtcagattataagagagggagagagaacttttaatcatgtgactgacatgtgactgacatgtgactaacatttcaaagactactcagcatgttacgtagtctaattttaatttgtattyttgtttgtgggtatcttgggttattttaaattgtacgagaatcctcgtaattgtaatagtagtggcggcgattataatgtgccctggatgtgtctatattggctttgtaaaaaaaataaaataataagtaaaaaaaaaactaatctatgcttgttgggtcccttactgccatattatacacgtaggtcttcaaataagccatataaagtaatttaaatgccatataaggtgtgtagatcaccttatatggcaaatrgattgcgatatatgtaaatcaagttaccttatccgtcaatgtgacatgtaaggggtagtagtttatttgaaatgtcacgtgactctgcaccatttatttttattcaggtttattcaaattttgtttacttaaaatgtcgtctgcctcctacgcatcccttgacgtaatttgtttacgtacagaactatgtgaatattttcagtttaactggtcttaattatcgtttagaaaaacgtatatttataatttaatttttgatagcgaacattttgaatttgtttaatgttttacggtcgctcttttggtagcagtatcgaaagccctttttaacaaggtcacgtggtctgggggaattcaatggctgctttgcgctcggctgtacaggctatcattacgggtgttgctttctttgtgaatggaggaaggttaaatgtttactgtgtttctgttgtttttttcgaagtaaagacatgttctgtttacctataaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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