LOCUS       NM_001156038            1412 bp    mRNA    linear   PLN 03-SEP-2021
DEFINITION  Zea mays Homeobox-leucine zipper protein ATHB-12 (LOC100193808),
            mRNA.
ACCESSION   NM_001156038
VERSION     NM_001156038.2
KEYWORDS    RefSeq.
SOURCE      Zea mays
  ORGANISM  Zea mays
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD
            clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
            Zea.
REFERENCE   1  (bases 1 to 1412)
  AUTHORS   Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J,
            Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes
            J, Walbot V and Yu Y.
  TITLE     Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs
  JOURNAL   PLoS Genet 5 (11), e1000740 (2009)
   PUBMED   19936069
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DR801186.1 and BT041114.1.
            
            On Jul 14, 2015 this sequence version replaced NM_001156038.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BT041114.1, BT036173.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03603544 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-784               DR801186.1         1-784
            785-1412            BT041114.1         557-1184
FEATURES             Location/Qualifiers
     source          1..1412
                     /organism="Zea mays"
                     /mol_type="mRNA"
                     /cultivar="B73"
                     /db_xref="taxon:4577"
                     /chromosome="2"
                     /map="2"
     gene            1..1412
                     /gene="LOC100193808"
                     /gene_synonym="GRMZM2G034113"
                     /note="Homeobox-leucine zipper protein ATHB-12"
                     /db_xref="GeneID:100193808"
     exon            1..691
                     /gene="LOC100193808"
                     /gene_synonym="GRMZM2G034113"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    296..298
                     /gene="LOC100193808"
                     /gene_synonym="GRMZM2G034113"
                     /note="upstream in-frame stop codon"
     CDS             341..1075
                     /gene="LOC100193808"
                     /gene_synonym="GRMZM2G034113"
                     /note="homeodomain-leucine zipper transcription factor
                     TaHDZipI-1; putative homeobox DNA-binding and leucine
                     zipper domain family protein"
                     /codon_start=1
                     /product="Homeobox-leucine zipper protein HOX6"
                     /protein_id="NP_001149510.2"
                     /db_xref="GeneID:100193808"
                     /translation="

MDGAEDDGTEWMMHGAGGKGKGGGALDKNKKRFSDEQTKSLESMFATQAKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYHALLCSYESLKDEKRALLKQLEKLAEMLHEPPQGKYYGGNADDVRSGGVGGTKEEEESTDACAGAALYSSECAGGGRFIAHFLADDDVGAALFRPPSSPQPTAGLLTSSGPPEHQPFQFHSGCCWPSSSAEQTCSGSQWWELESLSE"

     misc_feature    order(422..433,437..439,488..490,506..508,545..547,
                     551..556,563..568,572..580,584..589)
                     /gene="LOC100193808"
                     /gene_synonym="GRMZM2G034113"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(425..427,434..436,554..556,563..568,575..577)
                     /gene="LOC100193808"
                     /gene_synonym="GRMZM2G034113"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    434..586
                     /gene="LOC100193808"
                     /gene_synonym="GRMZM2G034113"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    590..715
                     /gene="LOC100193808"
                     /gene_synonym="GRMZM2G034113"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     exon            692..1412
                     /gene="LOC100193808"
                     /gene_synonym="GRMZM2G034113"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggcgctggctctggctctggctctggcagtccggctggcaggagagaattggcgagggattgggatcgggagcgaattcccagccagcccctgtctagagagggacaggccgcgcgcgcacgcacgccaccgcgttccattggccgcgtcgttgccatcacgccgacgactaaactagtcgatcacaccaagctcacaggctctcgatcgcctgtgatcgggctgccctgccgcctcttgctcccttcctcctctcgcccagcagcctagctacttgagcgagacgagctccagctgaggaagtgagaggtcgtggtccgagaggcgtgcgtgcgtggccatggacggcgccgaggacgacgggacggagtggatgatgcatggtgccggagggaagggaaaaggcggcggcgcgctcgacaagaacaagaagcgcttcagcgacgagcagaccaagtcgctggagtccatgttcgcgacgcaggccaagctggagccgcgccagaagctgcagctggcgcgggagctcggcctgcagccgcgccaggtcgccatctggttccagaacaagcgcgcgcgctggaagtccaagcagctggagcgcgagtactcggcgctgcgcgacgactaccacgcgctcctctgcagctacgagtccctcaaggacgagaagcgcgcgctcctcaagcagctggagaagctggccgagatgctgcacgagccgccgcagggcaagtactacggcggcaatgcggacgacgtgcgctcgggcggcgtcggcggcacgaaggaggaggaggagtccacagacgcctgcgccggggccgcgctctactcgtccgagtgcgctggcggtggcaggttcatcgcgcacttcttggcggacgacgacgtgggagcagccctcttccggccgccgtcgtctccgcagccgaccgctggcttactcacgtcgtcggggccgccggagcaccagccgttccagttccactccggctgctgctggccgtcgtcgtcggcggagcagacctgcagcggctcgcaatggtgggagttggagtccctcagcgagtgacgtacgatgatcacaagcggccgggggtcactcggttccaagcacacgtaactggccgggccaatacgagttcgttcgtagcggtctcgtcactcgtcagctagccctgcagagcaacggtgtacatagcttcagtagatcgaagtccaggtccaggtctgcccatcaagcagtttcttcttctcgccatcgatcatcgatcatgcatgcaaaagattttttttctctctcccttgctaccagatcatgtaatccagcaggaacatgtagagaaagatcaaacgaggttatagatcgagaaggtcgcctgcatatgcgagctagtctattcttttcc

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