2024-03-29 20:12:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001141665 1046 bp mRNA linear VRT 28-JUN-2020 DEFINITION Salmo salar homeobox protein HoxC11ab (hoxc11ab), mRNA. ACCESSION NM_001141665 VERSION NM_001141665.1 KEYWORDS RefSeq. SOURCE Salmo salar (Atlantic salmon) ORGANISM Salmo salar Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. REFERENCE 1 (bases 1 to 1046) AUTHORS Mungpakdee S, Seo HC, Angotzi AR, Dong X, Akalin A and Chourrout D. TITLE Differential evolution of the 13 Atlantic salmon Hox clusters JOURNAL Mol. Biol. Evol. 25 (7), 1333-1343 (2008) PUBMED 18424774 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EF695259.1. ##Evidence-Data-START## Transcript exon combination :: EF695259.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1046 /organism="Salmo salar" /mol_type="mRNA" /db_xref="taxon:8030" /chromosome="ssa15" /map="ssa15" gene 1..1046 /gene="hoxc11ab" /note="homeobox protein HoxC11ab" /db_xref="GeneID:100196636" exon 1..804 /gene="hoxc11ab" /inference="alignment:Splign:2.0.8" CDS 101..1021 /gene="hoxc11ab" /codon_start=1 /product="homeobox protein HoxC11ab" /protein_id="NP_001135137.1" /db_xref="GeneID:100196636" /translation="
MFNSVNLGNFCSQTRKDRTSEFGDRTGCASNIYLPNCTYYVPEFSAVSTFLPQASSRQITYPYSSNLPQVQPVREVSYGLDPSSKWHHRSNYASCYSGEDLVHRDCLPSSTMTEMLMKTNENVYSHHHHHHHHPSSNHSSTGFYPGVGKNNVLPQGFDRFFETAYCGADNQSAENCLHKSEASKLETESQQPAALLGAPDQDKDPEDEEEHTHSGSCTSSATKDGSASKNSHSSRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL"
misc_feature 224..610 /gene="hoxc11ab" /note="Protein of unknown function (DUF3528); Region: DUF3528; pfam12045" /db_xref="CDD:432284" misc_feature order(803..817,821..823,872..874,890..892,929..931, 935..940,947..952,956..964,968..973) /gene="hoxc11ab" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 809..970 /gene="hoxc11ab" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(809..811,818..820,938..940,947..952,959..961) /gene="hoxc11ab" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 805..1046 /gene="hoxc11ab" /inference="alignment:Splign:2.0.8" ORIGIN
gcgacttagacggattgcgcgtcatcttgccttcctaaattttccccttctgcagttcgaatccaaaacatttatctatagtacggagtacgggggaaagatgtttaactcggtgaatctgggaaacttctgctcccagacgcgcaaagaccggacatccgagtttggggacagaacgggctgcgcctcaaacatctacctcccgaactgcacctactacgtccccgaattttccgccgtctctacgtttcttccacaggcctcgtcgcggcagataacctacccatattcctcaaatctgcctcaagtgcagccggtacgggaagtttcctatggattggacccttctagtaaatggcaccatagaagcaattatgcatcatgctactctggagaggatctggtgcacagggactgtcttccgtcatccaccatgacagaaatgcttatgaaaactaacgagaatgtgtacagtcaccaccaccaccaccaccaccatcccagctccaaccattcctccacagggttctaccccggcgtggggaaaaacaacgtcctccctcaaggtttcgaccgctttttcgagaccgcatactgcggcgcggacaatcagtcagcagagaattgtttacataagagcgaggctagtaaactggaaacagagtcccagcagccagcggctctactgggcgccccagaccaggacaaggacccagaggatgaggaggaacatacacattcgggctcgtgtacttcttcagccacgaaggacggcagtgccagcaagaacagccactcgagtaggaagaagagatgtccatactccaaatttcagattcgagaattggagcgggagttcttctttaatgtttacatcaataaagagaaacggctgcagctttcccggatgctgaacctcaccgaccgacaggttaaaatctggtttcagaatcgaagaatgaaagaaaagaaattaagcagagatcgtttgcaatatttttctggaaaccctctattgtgagcatgtgaggagtgttaaagcatag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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