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2024-03-29 01:18:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001140323            1872 bp    mRNA    linear   VRT 12-JAN-2022
DEFINITION  Salmo salar Claudin-14 (cld14), mRNA.
ACCESSION   NM_001140323
VERSION     NM_001140323.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Leong JS, Jantzen SG, von Schalburg KR, Cooper GA, Messmer AM, Liao
            NY, Munro S, Moore R, Holt RA, Jones SJ, Davidson WS and Koop BF.
  TITLE     Salmo salar and Esox lucius full-length cDNA sequences reveal
            changes in evolutionary pressures on a post-tetraploidization
            genome
  JOURNAL   BMC Genomics 11, 279 (2010)
   PUBMED   20433749
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1872)
  AUTHORS   Tipsmark CK, Kiilerich P, Nilsen TO, Ebbesson LO, Stefansson SO and
            Madsen SS.
  TITLE     Branchial expression patterns of claudin isoforms in Atlantic
            salmon during seawater acclimation and smoltification
  JOURNAL   Am J Physiol Regul Integr Comp Physiol 294 (5), R1563-R1574 (2008)
   PUBMED   18321951
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BT045650.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BT045650.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa21"
                     /map="ssa21"
     gene            1..1872
                     /gene="cld14"
                     /note="Claudin-14"
                     /db_xref="GeneID:100195294"
     misc_feature    459..461
                     /gene="cld14"
                     /note="upstream in-frame stop codon"
     CDS             501..1247
                     /gene="cld14"
                     /codon_start=1
                     /product="Claudin-14 precursor"
                     /protein_id="NP_001133795.1"
                     /db_xref="GeneID:100195294"
                     /translation="
MASMAVQLLGFFLGLLGLVGSVVATVLPHWRRTAYVGSNIITATAYMKGLWMECVWHSTGIYQCEVHRSMLALPPDLQAARALMLLSCLTSTLAALVSSAGMKCTRCARGSSIKHALAISGGVCFLSAGMLCLITVCWTTNDVILDFYNPILPEGMKYEIGMAVYLGYVSACLSLMGGAVLCWNCEGRPRNPLHLPRHRHPCPPLVFNTINSPNTPAPPYYPPAALKGNYAPSRTSLSSNGYRLNDYV"
     sig_peptide     501..572
                     /gene="cld14"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    564..1043
                     /gene="cld14"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
ORIGIN      
agcaagtacacactcattgactttccagcagaccttcagagagactagctgcctgagctcagaggaccacgctcaacacgtggagctgaacgaagaacttgttagtcacagactcaatgacaccagggacagaaccctctgaagaagcatctgttgaagagctctagagagcacatggaagacagcactgaagccactgaagtcactgtacagagctccatagacgacactgaagacagcgaaaccacaacacctgagctccaaagggaccaccactgcaggatggcttcaacaccgtgactgactctagaccctctggagttccaacagcacagctgggaaccagagctaaagaccagaatattaggatactaaactcatgtctcaaagccattattgtgtggttgtgcgtgtgtctctgtgtgtgttgatttgtgtgtgctgtgtgtagcgttgtgtagttttgtgtgtgcagttgttcattagcggatgttccagacatggccagcatggcggtccagctgctgggcttcttcctgggtctgctggggcttgtgggtagtgtagttgctacagtgctcccccactggcggcggacggcctatgtgggctctaacataatcacagccactgcctacatgaaggggctctggatggagtgtgtgtggcacagcacgggcatctaccagtgtgaagtacatcgctcaatgctggctctgccacctgacctgcaggcggcacgggcgttgatgttgctgtcctgcctgacctccaccctggcagccctcgtgtcctctgcagggatgaagtgtacccgctgtgcccgcggctcgtccatcaagcatgccctggccatcagtggaggggtctgcttcctgtctgcaggcatgctctgcctaatcactgtctgctggacaaccaatgatgtcatcctcgacttctacaaccccatcctacctgaaggtatgaagtatgagattggcatggcggtgtatttgggctatgtctcggcctgtcttagtctgatgggaggagcggtgctctgttggaactgtgaggggcggcccaggaaccccctccatctacctcgtcatcgccacccttgtcctcccctcgtcttcaacactataaacagccccaacaccccagcacccccctactatccccctgccgccctgaaagggaactacgccccctcacgcacctcactgtccagcaatggctacagactcaacgactacgtctgagggatgaagtacacactcaatgaatgcttctagtgtgtaagtgcaaacactcaatgattaagtctgagtgtggcagataatagagactgattgagggaagttgaaactcaatgactacaaaataaagactcaagttacttttaagtgagcaagtacacactcattgactttccagcagaccttcagagagtcagtgaggatcagtgtggtttacagtgttgatgttgttcaggttgtgtccttcttctctaggactgcccacagctaatcctgtactacttatcctgtactacttatcctgtactacttatcctgttgactttgtatgtttactataagagcccaaaaaaacattaacaggacttattccctgatacaaaaatgagcttccttcataaaggcctttaggaaaaaatgacagcaggtatgataatggtaagtcaagttttatttcacatgtattatttgttcccgtttcattgctcataacttaatggatgttgtgaagcacttcctgtctttatagttttatagtctcatatttgtaaactgcttaatacttatactgctattttaaaatacaaagtcaccatggtacaacagaaaaaaaaaaaaaaaaaaaaga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]