2024-03-29 01:18:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001140323 1872 bp mRNA linear VRT 12-JAN-2022 DEFINITION Salmo salar Claudin-14 (cld14), mRNA. ACCESSION NM_001140323 VERSION NM_001140323.1 KEYWORDS RefSeq. SOURCE Salmo salar (Atlantic salmon) ORGANISM Salmo salar Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo. REFERENCE 1 (bases 1 to 1872) AUTHORS Leong JS, Jantzen SG, von Schalburg KR, Cooper GA, Messmer AM, Liao NY, Munro S, Moore R, Holt RA, Jones SJ, Davidson WS and Koop BF. TITLE Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome JOURNAL BMC Genomics 11, 279 (2010) PUBMED 20433749 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1872) AUTHORS Tipsmark CK, Kiilerich P, Nilsen TO, Ebbesson LO, Stefansson SO and Madsen SS. TITLE Branchial expression patterns of claudin isoforms in Atlantic salmon during seawater acclimation and smoltification JOURNAL Am J Physiol Regul Integr Comp Physiol 294 (5), R1563-R1574 (2008) PUBMED 18321951 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT045650.1. ##Evidence-Data-START## Transcript exon combination :: BT045650.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1872 /organism="Salmo salar" /mol_type="mRNA" /db_xref="taxon:8030" /chromosome="ssa21" /map="ssa21" gene 1..1872 /gene="cld14" /note="Claudin-14" /db_xref="GeneID:100195294" misc_feature 459..461 /gene="cld14" /note="upstream in-frame stop codon" CDS 501..1247 /gene="cld14" /codon_start=1 /product="Claudin-14 precursor" /protein_id="NP_001133795.1" /db_xref="GeneID:100195294" /translation="
MASMAVQLLGFFLGLLGLVGSVVATVLPHWRRTAYVGSNIITATAYMKGLWMECVWHSTGIYQCEVHRSMLALPPDLQAARALMLLSCLTSTLAALVSSAGMKCTRCARGSSIKHALAISGGVCFLSAGMLCLITVCWTTNDVILDFYNPILPEGMKYEIGMAVYLGYVSACLSLMGGAVLCWNCEGRPRNPLHLPRHRHPCPPLVFNTINSPNTPAPPYYPPAALKGNYAPSRTSLSSNGYRLNDYV"
sig_peptide 501..572 /gene="cld14" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 564..1043 /gene="cld14" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
agcaagtacacactcattgactttccagcagaccttcagagagactagctgcctgagctcagaggaccacgctcaacacgtggagctgaacgaagaacttgttagtcacagactcaatgacaccagggacagaaccctctgaagaagcatctgttgaagagctctagagagcacatggaagacagcactgaagccactgaagtcactgtacagagctccatagacgacactgaagacagcgaaaccacaacacctgagctccaaagggaccaccactgcaggatggcttcaacaccgtgactgactctagaccctctggagttccaacagcacagctgggaaccagagctaaagaccagaatattaggatactaaactcatgtctcaaagccattattgtgtggttgtgcgtgtgtctctgtgtgtgttgatttgtgtgtgctgtgtgtagcgttgtgtagttttgtgtgtgcagttgttcattagcggatgttccagacatggccagcatggcggtccagctgctgggcttcttcctgggtctgctggggcttgtgggtagtgtagttgctacagtgctcccccactggcggcggacggcctatgtgggctctaacataatcacagccactgcctacatgaaggggctctggatggagtgtgtgtggcacagcacgggcatctaccagtgtgaagtacatcgctcaatgctggctctgccacctgacctgcaggcggcacgggcgttgatgttgctgtcctgcctgacctccaccctggcagccctcgtgtcctctgcagggatgaagtgtacccgctgtgcccgcggctcgtccatcaagcatgccctggccatcagtggaggggtctgcttcctgtctgcaggcatgctctgcctaatcactgtctgctggacaaccaatgatgtcatcctcgacttctacaaccccatcctacctgaaggtatgaagtatgagattggcatggcggtgtatttgggctatgtctcggcctgtcttagtctgatgggaggagcggtgctctgttggaactgtgaggggcggcccaggaaccccctccatctacctcgtcatcgccacccttgtcctcccctcgtcttcaacactataaacagccccaacaccccagcacccccctactatccccctgccgccctgaaagggaactacgccccctcacgcacctcactgtccagcaatggctacagactcaacgactacgtctgagggatgaagtacacactcaatgaatgcttctagtgtgtaagtgcaaacactcaatgattaagtctgagtgtggcagataatagagactgattgagggaagttgaaactcaatgactacaaaataaagactcaagttacttttaagtgagcaagtacacactcattgactttccagcagaccttcagagagtcagtgaggatcagtgtggtttacagtgttgatgttgttcaggttgtgtccttcttctctaggactgcccacagctaatcctgtactacttatcctgtactacttatcctgtactacttatcctgttgactttgtatgtttactataagagcccaaaaaaacattaacaggacttattccctgatacaaaaatgagcttccttcataaaggcctttaggaaaaaatgacagcaggtatgataatggtaagtcaagttttatttcacatgtattatttgttcccgtttcattgctcataacttaatggatgttgtgaagcacttcctgtctttatagttttatagtctcatatttgtaaactgcttaatacttatactgctattttaaaatacaaagtcaccatggtacaacagaaaaaaaaaaaaaaaaaaaaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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