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2020-11-27 00:56:00, GGRNA.v2 : RefSeq release 202 (Sep, 2020)

LOCUS       NM_001136547            1119 bp    mRNA    linear   VRT 28-JUN-2020
DEFINITION  Salmo salar PROP paired-like homeobox 1 (prop1), mRNA.
ACCESSION   NM_001136547
VERSION     NM_001136547.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Angotzi AR, Mungpakdee S, Stefansson S, Male R and Chourrout D.
  TITLE     Involvement of Prop1 homeobox gene in the early development of fish
            pituitary gland
  JOURNAL   Gen. Comp. Endocrinol. 171 (3), 332-340 (2011)
   PUBMED   21362424
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EF693961.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF693961.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02864008, SAMN02864160
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa18"
                     /map="ssa18"
     gene            1..1119
                     /gene="prop1"
                     /note="PROP paired-like homeobox 1"
                     /db_xref="GeneID:100192335"
     exon            1..95
                     /gene="prop1"
                     /inference="alignment:Splign:2.0.8"
     CDS             2..718
                     /gene="prop1"
                     /note="Prop-1-like homeobox protein"
                     /codon_start=1
                     /product="PROP paired-like homeobox 1"
                     /protein_id="NP_001130019.1"
                     /db_xref="GeneID:100192335"
                     /translation="
MAQVKSPVDGVKSQQQRAEMYSDITIVSSSADVGSPARKGPFDSMALGLSRRGRAYPSPARRRHRTTFSHKQLDQLEMAFGQNHYPDIYCREELARLTKLNEARIQVWFQNRRAKYRRQERASQKLLPMAMMPGHGALLGSMCVQSTGLTRQYYPHSLAHHITRFPSMLPSGGCSHSHHPGSAGQCSCPTVPPEPQPPRQHEEWYSPLRNIGAPPSNLATPVFSLTSMPALDPGSHWN"
     misc_feature    <128..472
                     /gene="prop1"
                     /note="Homeodomain-containing transcription factor
                     [Transcription]; Region: COG5576"
                     /db_xref="CDD:227863"
     misc_feature    order(185..199,203..205,254..256,272..274,311..313,
                     317..322,329..334,338..346,350..355)
                     /gene="prop1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    191..352
                     /gene="prop1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:278475"
     misc_feature    order(191..193,200..202,320..322,329..334,341..343)
                     /gene="prop1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            96..319
                     /gene="prop1"
                     /inference="alignment:Splign:2.0.8"
     exon            320..1095
                     /gene="prop1"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
gatggcccaggttaagtcacccgtggatggtgtcaagagtcagcagcagcgtgcagagatgtactctgatattaccatcgtcagctccagcgcagatgtgggcagcccagccagaaaaggcccatttgacagtatggctctagggctcagcaggcgtgggagagcctacccatccccagcacgcaggcgccatcgcaccaccttcagtcacaagcagctggaccagctggagatggcgtttggacagaaccactaccctgacatctactgccgtgaggaactagcgaggctcaccaaactcaatgaggcacgcatacaggtatggttccaaaatcgccgcgccaaataccgcaggcaggagcgtgcgtctcagaagctcttgccaatggccatgatgccagggcacggggcactgttgggcagcatgtgtgttcagtccacagggttgacccgtcagtactaccctcactccctggctcaccatatcacccggttcccctctatgctgccctcaggtggttgctcccactcccaccacccaggctcagccggccagtgttcctgccccacagtcccaccagagccacaacccccccgccagcacgaggagtggtacagcccgctacggaacattggagccccaccaagcaacctggccacacctgtgttctccctgacctccatgcctgctctagaccctggctctcactggaactaaagaaagagtaacttntacgtcaggaggtagacaagctcttttaggctgtgtctcaaagaactaacagttattcattgcaccttagattagattacaaaatacagttttttgtatctatgcagtgatagctagtaactaaagaacaggaagaatttagagaatagtgagaatgacttaactccttctcccattgaatacctgaaattgcatgtgttctgtgactagcagattaaagttcagggtagcctaactgagagaaagacatttgtgggtaattttgaattatccatatagattgtctgaaatatatactatacatctttctcctaacaatgccttttgtattttcactgtaaataaagttgtgtgtttcgggaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]