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2024-07-15 05:11:32, GGRNA.v2 : RefSeq release 224 (May, 2024)

LOCUS       NM_001134803            1795 bp    mRNA    linear   VRT 22-DEC-2019
DEFINITION  Xenopus tropicalis vimentin (vim), mRNA.
ACCESSION   NM_001134803
VERSION     NM_001134803.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev. Dyn. 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC168783.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC135297.1, BC087987.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00861990, SAMN00861991
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="6"
                     /map="6"
     gene            1..1795
                     /gene="vim"
                     /gene_synonym="vim-a; vim-b"
                     /note="vimentin"
                     /db_xref="GeneID:496727"
                     /db_xref="Xenbase:XB-GENE-493024"
     CDS             70..1455
                     /gene="vim"
                     /gene_synonym="vim-a; vim-b"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="NP_001128275.1"
                     /db_xref="GeneID:496727"
                     /db_xref="Xenbase:XB-GENE-493024"
                     /translation="
MATTKSSYRRIFGGNPRSSSSGNRYVTSSTRYSLGSAMRPGAGSSSSRVVYSTSASPAVFKSSSVRLRSSLPPARLADTVDFTLADAVNLEYKANRTNEKAEMQELNDRFANFIDKVRFLEQQNKILVAELEQLKGKGTSRIGDLYEEEMRELRRQLDQVTNAKDRVEVDRDNLADDLQRLREKLQDEMIQKEEAEGNLQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEDWYKSKFADLSEAANRNNDALRQAKQDANDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFAGEAANYQDTIQRLQEEIHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITVPVHSFSSMSLRETNLDSHPVESHSKRTLLIKTVETRDGQVINESSQHHDDLE"
     misc_feature    85..360
                     /gene="vim"
                     /gene_synonym="vim-a; vim-b"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:461414"
     misc_feature    361..1287
                     /gene="vim"
                     /gene_synonym="vim-a; vim-b"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
ORIGIN      
gaggggtgctcacatagaaactcaagtgtccaaggaattacaaaggaaacccagagcctaagcaccacaatggcaacaaccaagtcatcttacagaaggattttcgggggaaaccctaggtcgagctcctctggaaatcgctatgtgacctccagcaccaggtattccctgggcagtgccatgcgcccaggcgcaggcagcagcagcagcagagttgtctattccacatctgcctcccctgctgtattcaagtcctcctcggtaaggctgagaagcagccttcccccagccaggctggcagacacagtggacttcaccctagcagatgctgtcaaccttgaatataaagccaacaggaccaacgaaaaggctgaaatgcaagagctaaatgacagatttgccaacttcatcgacaaggtgcgattcctggagcagcagaacaagatccttgtggctgaactggaacagctgaaagggaagggaacctcacggataggggacctctacgaggaggagatgagggagctccgtagacaattagatcaagtgaccaacgctaaagaccgggtagaagtagacagagacaacctggccgatgacctccagcgactgagagaaaagctacaagatgaaatgatccagaaggaagaagcagaaggcaacctgcagtcatttagacaggatgtggacaatgcctctttggcacgtattgacttggagaggaaagtggagtctttacaagaggagattgttttcctgaagaaactccatgatgaggaaatccgagaacttcagcttcaaattcaggagtcacatatccaggttgacatggatgtgtccaaaccggacctcactgctgccctgcgtgatgtccgccagcagtacgagaatgtggctgctaaaaatctttcggatgccgaagactggtacaagtctaagtttgcggacctgtcggaagctgctaatcgcaacaatgatgccctgcgtcaagctaagcaggatgccaatgactaccgcagacagatccagactctcacctgcgagattgatgcaatgaaaggatctaatgagtcttacgaacgccaaatgcgagaaatggaggagaattttgccggagaagctgctaattatcaggacactattcagcgcctgcaagaggagatccacaacatgaaggaagagatggctcggcacttgcgagagtaccaggatctgctcaatgttaagatggcccttgatatagagattgctacttacaggaaactcctggagggagaagagagcagaattactgttcccgtacattccttttcttcaatgagccttagagaaaccaaccttgattcgcacccagtggaaagccattccaaacgcactctgctcatcaagactgtggagacaagagatggacaggttattaatgaaagctctcagcaccatgatgacctggaatgaaactgaaatatccaaagcaaagcggagaacctttaccagcaccgtaatactgttacctgttttaaagtttgaagaaaaccagctttcaagtgccttttgcagtaaattggagagcacaagatagggataagctaactgctaattaggagtttggtttgagtgacagcccttgagaaggtcacacagcgagcttccttctgtctagtttacagacaatgtaatagcaaagatcttgtgccgcaatactgtttttacattcccaagaaaaaagctttttttatttccaggcaatgtgcagccagtgcttcaataaatctttagaaataaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]