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2020-11-27 00:17:48, GGRNA.v2 : RefSeq release 202 (Sep, 2020)

LOCUS       NM_001134095            3427 bp    mRNA    linear   PRI 27-JUN-2020
DEFINITION  Pongo abelii PBX/knotted 1 homeobox 2 (PKNOX2), mRNA.
ACCESSION   NM_001134095
VERSION     NM_001134095.1
KEYWORDS    RefSeq.
SOURCE      Pongo abelii (Sumatran orangutan)
  ORGANISM  Pongo abelii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Pongo.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CR860477.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR860477.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3427
                     /organism="Pongo abelii"
                     /mol_type="mRNA"
                     /db_xref="taxon:9601"
                     /chromosome="11"
                     /map="11"
     gene            1..3427
                     /gene="PKNOX2"
                     /note="PBX/knotted 1 homeobox 2"
                     /db_xref="GeneID:100174645"
     misc_feature    209..211
                     /gene="PKNOX2"
                     /note="upstream in-frame stop codon"
     CDS             221..1639
                     /gene="PKNOX2"
                     /note="PBX/knotted homeobox 2"
                     /codon_start=1
                     /product="homeobox protein PKNOX2"
                     /protein_id="NP_001127567.1"
                     /db_xref="GeneID:100174645"
                     /translation="
MMQHASPAPALTMMATQNVPPPPYQDSPQMTATTQPPSKAQAVHISAPSAAASTPVPSAPIDPQAQLEADKRAVYRHPLFPLLTLLFEKCEQATQGSECITSASFDVDIENFVHQQEQEHKPFFSDDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNLLRNDLGGPYSPNQPSINLHSQDLLQNSPNSMSGVSNNPQGIVVPASALQQGNIAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLTSLLDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFVNARRRILQPMLDASNPDPAPKAKKIKSQHRPTQRFWPNSIAAGVLQQQGGAPGTNPDGSINLDNLQSLSSDNATMAMQQAMMAAHDDSLDGTEEEDEDEMEEEEEEELEEEVDELQTTNVSDLGLEHSDSLV"
     misc_feature    506..757
                     /gene="PKNOX2"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:293102"
     misc_feature    order(1085..1099,1103..1105,1163..1165,1181..1183,
                     1220..1222,1226..1231,1238..1243,1247..1255)
                     /gene="PKNOX2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1091..1093,1100..1102,1229..1231,1238..1243,
                     1250..1252)
                     /gene="PKNOX2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1136..1255
                     /gene="PKNOX2"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:283551"
ORIGIN      
ggatgaagattggcatcaggtgaagtctggagcaggacttctgaagctttctatcctccatgctgctcactagaaaaggggctgtgaactgtgctttggctctagcagacaggaagaaattctggcccagctggaagtagaaagaggggagtgagtctcctgaggaccatctcagaggcccccgggatcacccgaacagtcctccatgtgaatcaatcccatgatgcaacatgcctccccagcccccgctctgacgatgatggccacgcagaatgtcccgcccccaccctaccaggacagcccacagatgacggcaaccacccagccaccctccaaggcccaggctgtccacatctctgccccctcagctgctgccagcacacctgtgcccagtgcccccatcgacccccaggcccagctggaggctgacaagcgagctgtatacaggcaccctcttttcccgctcctgacgctgctgtttgagaaatgtgaacaggccacccagggctctgagtgcatcacctccgccagctttgatgtggacatcgagaactttgtccaccaacaggaacaggagcacaaacccttcttcagcgatgacccagaactggacaatctgatggtgaaggcaatccaggtcctgagaatccacctgctggagctggagaaagtcaatgaactctgcaaggacttttgtaaccgttacatcacctgcctcaaaaccaagatgcacagcgataacctgctcaggaatgatctaggggggccatactcccccaaccagccctccatcaaccttcactcacaggacctcctgcagaattcccccaattccatgtctggagtctccaataacccccaggggattgtggtcccagcctcagcgctccagcagggcaacatcgccatgacaaccgtcaactcacaagtcgtgtcaggtggagccttataccaaccggttaccatggtaacctcccagggtcaggtggtcacccaagcaatcccccagggagccatccagatccagaacacacaggttaaccttgacctcacctccctcctggacaatgaggataagaagtccaagaacaaacgaggagtcttgcccaagcatgccaccaatataatgcgttcttggctcttccagcatctcatgcacccctaccccacggaggatgagaagaggcagatcgcagcccagaccaacctcaccctcctgcaagtaaacaactggttcgtcaatgcccggaggcgcatcctgcagcccatgcttgatgccagcaacccagatcctgcccccaaagccaagaagatcaagtcccagcaccggcccacccaaagattctggcccaactccatcgctgcgggggtgctgcagcagcagggtggtgccccagggacaaaccccgatggttccatcaacttagacaacctgcagtccctgtcctcagacaatgccaccatggccatgcagcaggctatgatggctgcacacgatgactcattggatgggacagaagaagaggatgaggatgagatggaagaggaggaggaggaggagctggaggaggaggtcgatgagctgcagacgacgaatgtcagcgacctgggcttggaacacagtgactccctggtgtagtcgggcagcccagatggcactgatcaccgagcaggagaggagtgtcgccgggaggccttcagggtgggggggaaggggacatgggcaggaagcactgagggagttgggccctagcttccccaaatcagtagcttgaagaaaggcagaggagacacctgttccttcccaaccaccgagcctcaatgaggaccccagccccacttccctggaactgctgaggactctgtttggtggggccagtcgagcagcctgtatggaaagacaggactgagatctggactcaccaaatccctgaggacagatggcacccatggcccccacccacggaaggacttgagttgtttacaagccctgcactgtgaggcagattggtgctgttcgcagagtaggcctttgcccgggggcagacttagaaggaaggggagagacaaagggggactgagtttcatccccagaaggttctcagctcctttgacagacattcaagggcaggagggagccccaaagcataaccagtggccagaggagtgggagggcctgaggcatcacatcttgcagatcagaatgggatggaatccaccgggctccagctcatccctccaaggccctgtctctgcgcacagcaaccatggacatgggagagagggatgggagccacagtgcccttcactctctcctggaaacaaattgtaagctggtgggctcaacctgtgggaggttaagaggagtcccttctgggttgactccaggagccaaggagatggcagaccctgggctaggagccatatcgaggtgactttgaggccacagctgtccctaggtggtcacagaacttagctcctgtaacaacaggacaatggtgttttaccctagatgttcccaccctcagcactccacgccctccatagaccttcagagaaggcgaaaccaggttatctgggaatctttccaccccgcaggtcgccacggccgtccctctgctcccaggctggctccatccgcctccagcttcctttcttcattctgtccttcagggaaggcagaagaaacattggaaagcatctagtccagtgggaagccaggggttggagaaggtgctacatccctcttcccatcaatatcccaaatgtgggggaggtcccagagaacggcacccaagagcctgtgggaatgcccaccccacccaccccatccaccctgctgttctaaccctgctgtccacagccctggaggaactggggctcctggaaagaggaggaggctctccactgtccaccctaacacataccctcccacccaccttccataccccttggttggcacgctctcctctcgttctgtctcaccccatggctgtgaatgacaggacaggtcacacgtgtgttttccattgggtttaatttaatggacgtgcagtttcatttgtaaattgtgcattggccatctccttcagtggcaggatgtgagtggctacctggctcaactggaggggaccctcggggccctctggggcttcccctcccccacctggttggggtagagcaaaaggatggtcactcttccaaggtctccctgaaatgaatgtatttctccccccaaaagagctgatatttaatgttttaatagggatttttgagaaacaaataaccttatttataatctgggtgatccaatcattttttactcccttttgatgccatacatagaggaaagtctagcttttttggcgtgagacttttggaatgtgcagtgggataaaatgcgtttcctttaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]