2024-03-29 21:32:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001129916 1036 bp mRNA linear VRT 05-JAN-2021 DEFINITION Xenopus tropicalis VENT homeobox 3, gene 2 (ventx3.2), mRNA. ACCESSION NM_001129916 VERSION NM_001129916.1 KEYWORDS RefSeq. SOURCE Xenopus tropicalis (tropical clawed frog) ORGANISM Xenopus tropicalis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana. REFERENCE 1 (bases 1 to 1036) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev Dyn 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC167675.1. ##Evidence-Data-START## Transcript exon combination :: BC167675.1, CX435103.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028290, SAMD00028291 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1036 /organism="Xenopus tropicalis" /mol_type="mRNA" /db_xref="taxon:8364" /chromosome="7" /map="7" gene 1..1036 /gene="ventx3.2" /gene_synonym="vex1; Xvex-1" /note="VENT homeobox 3, gene 2" /db_xref="GeneID:100170150" /db_xref="Xenbase:XB-GENE-483077" exon 1..295 /gene="ventx3.2" /gene_synonym="vex1; Xvex-1" /inference="alignment:Splign:2.1.0" misc_feature 22..24 /gene="ventx3.2" /gene_synonym="vex1; Xvex-1" /note="upstream in-frame stop codon" CDS 31..879 /gene="ventx3.2" /gene_synonym="vex1; Xvex-1" /note="ventral homeobox 1; ventral homeobox protein; homeodomain transcription factor vex-1" /codon_start=1 /product="homeobox protein vex1" /protein_id="NP_001123388.1" /db_xref="GeneID:100170150" /db_xref="Xenbase:XB-GENE-483077" /translation="
MEKRPYSVAWLSESSQRKPLCTNVDLLGYKSGNPDLPPNREYNVSLPSRVILPTPDYREKENYCGRNVHNGERSPPVRDQLHFHPAPQELTTSRRTSIEVSAESSTDQRVIGMTDTNKKTKSVCDEDAASRARTKFTAEQLEELEKSFKENRYIGSSEKRRLSKVLKLSENQIKTWFQNRRMKFKRQTQDARVEAFFSGLYLPYYGYPDLPTPGYSVQSEFPVLAPQTMAASSIPFGPLHSTVMSPGLHPAIPSANLGSYPCSSMLVRPILNEPTRQRYSPY"
misc_feature order(421..432,436..438,487..489,505..507,544..546, 550..555,562..567,571..579,583..588) /gene="ventx3.2" /gene_synonym="vex1; Xvex-1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(424..426,433..435,553..555,562..567,574..576) /gene="ventx3.2" /gene_synonym="vex1; Xvex-1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 427..585 /gene="ventx3.2" /gene_synonym="vex1; Xvex-1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 296..546 /gene="ventx3.2" /gene_synonym="vex1; Xvex-1" /inference="alignment:Splign:2.1.0" exon 547..1021 /gene="ventx3.2" /gene_synonym="vex1; Xvex-1" /inference="alignment:Splign:2.1.0" ORIGIN
gtggaaggggaaacacaaacgtgaaggactatggagaagagaccatactcagtggcatggctttcagagagcagtcagaggaaacccctctgcaccaatgtggatctattgggatacaaaagtggaaatccagacttgccgcctaacagggaatacaatgtctcattgccatcgagagttatattgccaactccggactacagagagaaggaaaattattgtggaaggaatgtccacaatggagagagaagcccaccggttagagaccaactgcatttccacccagcaccacaagagcttactacatctcgaaggacttcaatagaggtttccgctgagtcaagcactgaccaacgagtcattggcatgactgacaccaataagaagacaaaatctgtatgtgatgaagatgccgcttccagagcccgcaccaagttcaccgctgagcagctggaggagcttgagaagagcttcaaggagaacagatacattggatccagtgagaaaaggcggctgtccaaggtgctgaaactctctgagaatcagatcaaaacctggtttcagaatagaaggatgaagttcaagcgccaaacacaagatgcaagggttgaagctttcttttcaggactttatttgccttattatggttaccccgaccttccaacacctggatattccgtccagtcggagtttcctgtcctggctcctcagacaatggcagcctcatctattccatttggccctctgcactctactgtaatgtcacctggactccatccagctattccttccgcaaaccttggctcttatccatgctcttccatgcttgtacgcccaatactcaatgagcccacccgacaaagatacagcccatactaactgaaagcattcttggagcaccattgttattattttttatggacacattcaattatttattataagttattacacaatgtaaaaaagagaacattctgttttattactaattttaataataaaaaaaatctgttttaatgcaaaaaaaaaaaaaaaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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