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2024-03-29 16:34:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001114409            1224 bp    mRNA    linear   VRT 18-DEC-2022
DEFINITION  Danio rerio mohawk homeobox b (mkxb), mRNA.
ACCESSION   NM_001114409 XM_678904
VERSION     NM_001114409.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1224)
  AUTHORS   Adachi Y, Higuchi A, Wakai E, Shiromizu T, Koiwa J and Nishimura Y.
  TITLE     Involvement of homeobox transcription factor Mohawk in
            palatogenesis
  JOURNAL   Congenit Anom (Kyoto) 62 (1), 27-37 (2022)
   PUBMED   34816492
REFERENCE   2  (bases 1 to 1224)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1224)
  AUTHORS   Hsu CH, Lin JS, Po Lai K, Li JW, Chan TF, You MS, Tse WK and Jiang
            YJ.
  TITLE     A new mib allele with a chromosomal deletion covering foxc1a
            exhibits anterior somite specification defect
  JOURNAL   Sci Rep 5, 10673 (2015)
   PUBMED   26039894
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1224)
  AUTHORS   Briolat V, Jouneau L, Carvalho R, Palha N, Langevin C, Herbomel P,
            Schwartz O, Spaink HP, Levraud JP and Boudinot P.
  TITLE     Contrasted innate responses to two viruses in zebrafish: insights
            into the ancestral repertoire of vertebrate IFN-stimulated genes
  JOURNAL   J Immunol 192 (9), 4328-4341 (2014)
   PUBMED   24683187
REFERENCE   5  (bases 1 to 1224)
  AUTHORS   Anderson DM, Beres BJ, Wilson-Rawls J and Rawls A.
  TITLE     The homeobox gene Mohawk represses transcription by recruiting the
            sin3A/HDAC co-repressor complex
  JOURNAL   Dev Dyn 238 (3), 572-580 (2009)
   PUBMED   19235719
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU280786.1.
            
            On Feb 10, 2008 this sequence version replaced XM_678904.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU280786.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476730, SAMEA4476731
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1224
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="2"
                     /map="2"
     gene            1..1224
                     /gene="mkxb"
                     /note="mohawk homeobox b"
                     /db_xref="GeneID:556167"
                     /db_xref="ZFIN:ZDB-GENE-080513-2"
     exon            1..125
                     /gene="mkxb"
                     /inference="alignment:Splign:2.1.0"
     exon            126..383
                     /gene="mkxb"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    202..204
                     /gene="mkxb"
                     /note="upstream in-frame stop codon"
     misc_feature    205..207
                     /gene="mkxb"
                     /note="upstream_AUG_codon; putative N-terminal extension:
                     ME"
     CDS             211..1224
                     /gene="mkxb"
                     /note="homeobox protein mohawk B"
                     /codon_start=1
                     /product="mohawk homeobox b"
                     /protein_id="NP_001107881.1"
                     /db_xref="GeneID:556167"
                     /db_xref="ZFIN:ZDB-GENE-080513-2"
                     /translation="
MNTAVFSKFDQLRFEESGQNVERSSRSYLELIDGQRSDLLTSHKVMDGNDALKHRRNGGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSHMTLVQVSNWFANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSISSDDTTSDDGENNLQMQASESDYNRAVHKSVIQDSRVKVGRNADPSVCDDYVSPPKYKNSLLNRYLNDSLRHVMASDKVMDSRKRNHSGSFSSNEYEDDFLSPSSEAEANFTYHTVTLDCGTRQSESGARKGGNNETYWKELHAAMALTNLAQVKESSAAGTTSCIIQKSSHIAEIKTVKVPIQPRH"
     misc_feature    order(397..411,415..417,472..474,490..492,529..531,
                     535..540,547..552,556..564,568..573)
                     /gene="mkxb"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(403..405,412..414,538..540,547..552,559..561)
                     /gene="mkxb"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    448..564
                     /gene="mkxb"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            384..531
                     /gene="mkxb"
                     /inference="alignment:Splign:2.1.0"
     exon            532..685
                     /gene="mkxb"
                     /inference="alignment:Splign:2.1.0"
     exon            686..1006
                     /gene="mkxb"
                     /inference="alignment:Splign:2.1.0"
     exon            1007..1040
                     /gene="mkxb"
                     /inference="alignment:Splign:2.1.0"
     exon            1041..1224
                     /gene="mkxb"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
agactccagagctgctccatatagtggaaaagcgcagatgcagagcgcagagctgcaaatgaagatgagctgacaggatgctggacgactctgaaactacactatagcgacgcacagggaactttgttgcgtcctagtaatttcagggaaaatattccgtgcacagactttggaggtacatgtggatttggcacatggcagtgaatggagatgaacacggcagtcttcagtaagtttgaccagctgcgctttgaggaaagcggacaaaatgtggagagaagcagcaggagttatttagagctgattgatggacaacgttcagatttactcacgagccacaaagtgatggatggcaacgacgctctcaaacacaggagaaatggtggagggaaggtgcgtcacaagcgtcaggctcttcaggatatggctcgaccgctgaagcagtggctctacaagcaccgggacaatccttatcccaccaagactgagaagatactgctggctcttgggtcccacatgaccctggttcaggtgtcaaattggtttgcgaatgcaaggcgtagactcaagaacacagttcgacagccggacttgagctgggctttacgtataaaactgtacaacaaatatgtccaaggcaacgcagagagactgagcattagcagtgatgacacaacatcagatgatggggagaacaatttgcagatgcaggccagcgagtccgactataacagagccgtgcacaagagcgttattcaggacagcagagtcaaagtgggccgaaacgcagacccctcggtttgtgatgattatgtttcgccaccgaaatacaagaacagcttgctgaaccgctatctgaatgattcccttcggcatgtaatggcctctgataaagttatggactctcggaagaggaaccattcgggatcgtttagctccaacgagtatgaggatgattttctctcgccctcttcagaagctgaggcaaacttcacctaccacacagtgacgctggactgcggcacacgccagagcgagagcggcgctcgtaaaggaggaaataatgagacctactggaaagagctccacgccgccatggccctgaccaacctggctcaagtaaaggagagctccgcggcgggtacaaccagctgtatcattcagaagtcttcccatatagcggagattaagactgtcaaagtgcccatacaaccccgacattag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]