2024-03-29 16:34:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001114409 1224 bp mRNA linear VRT 18-DEC-2022 DEFINITION Danio rerio mohawk homeobox b (mkxb), mRNA. ACCESSION NM_001114409 XM_678904 VERSION NM_001114409.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1224) AUTHORS Adachi Y, Higuchi A, Wakai E, Shiromizu T, Koiwa J and Nishimura Y. TITLE Involvement of homeobox transcription factor Mohawk in palatogenesis JOURNAL Congenit Anom (Kyoto) 62 (1), 27-37 (2022) PUBMED 34816492 REFERENCE 2 (bases 1 to 1224) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1224) AUTHORS Hsu CH, Lin JS, Po Lai K, Li JW, Chan TF, You MS, Tse WK and Jiang YJ. TITLE A new mib allele with a chromosomal deletion covering foxc1a exhibits anterior somite specification defect JOURNAL Sci Rep 5, 10673 (2015) PUBMED 26039894 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1224) AUTHORS Briolat V, Jouneau L, Carvalho R, Palha N, Langevin C, Herbomel P, Schwartz O, Spaink HP, Levraud JP and Boudinot P. TITLE Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes JOURNAL J Immunol 192 (9), 4328-4341 (2014) PUBMED 24683187 REFERENCE 5 (bases 1 to 1224) AUTHORS Anderson DM, Beres BJ, Wilson-Rawls J and Rawls A. TITLE The homeobox gene Mohawk represses transcription by recruiting the sin3A/HDAC co-repressor complex JOURNAL Dev Dyn 238 (3), 572-580 (2009) PUBMED 19235719 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU280786.1. On Feb 10, 2008 this sequence version replaced XM_678904.2. ##Evidence-Data-START## Transcript exon combination :: EU280786.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4476730, SAMEA4476731 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1224 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="2" /map="2" gene 1..1224 /gene="mkxb" /note="mohawk homeobox b" /db_xref="GeneID:556167" /db_xref="ZFIN:ZDB-GENE-080513-2" exon 1..125 /gene="mkxb" /inference="alignment:Splign:2.1.0" exon 126..383 /gene="mkxb" /inference="alignment:Splign:2.1.0" misc_feature 202..204 /gene="mkxb" /note="upstream in-frame stop codon" misc_feature 205..207 /gene="mkxb" /note="upstream_AUG_codon; putative N-terminal extension: ME" CDS 211..1224 /gene="mkxb" /note="homeobox protein mohawk B" /codon_start=1 /product="mohawk homeobox b" /protein_id="NP_001107881.1" /db_xref="GeneID:556167" /db_xref="ZFIN:ZDB-GENE-080513-2" /translation="
MNTAVFSKFDQLRFEESGQNVERSSRSYLELIDGQRSDLLTSHKVMDGNDALKHRRNGGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSHMTLVQVSNWFANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSISSDDTTSDDGENNLQMQASESDYNRAVHKSVIQDSRVKVGRNADPSVCDDYVSPPKYKNSLLNRYLNDSLRHVMASDKVMDSRKRNHSGSFSSNEYEDDFLSPSSEAEANFTYHTVTLDCGTRQSESGARKGGNNETYWKELHAAMALTNLAQVKESSAAGTTSCIIQKSSHIAEIKTVKVPIQPRH"
misc_feature order(397..411,415..417,472..474,490..492,529..531, 535..540,547..552,556..564,568..573) /gene="mkxb" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(403..405,412..414,538..540,547..552,559..561) /gene="mkxb" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 448..564 /gene="mkxb" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 384..531 /gene="mkxb" /inference="alignment:Splign:2.1.0" exon 532..685 /gene="mkxb" /inference="alignment:Splign:2.1.0" exon 686..1006 /gene="mkxb" /inference="alignment:Splign:2.1.0" exon 1007..1040 /gene="mkxb" /inference="alignment:Splign:2.1.0" exon 1041..1224 /gene="mkxb" /inference="alignment:Splign:2.1.0" ORIGIN
agactccagagctgctccatatagtggaaaagcgcagatgcagagcgcagagctgcaaatgaagatgagctgacaggatgctggacgactctgaaactacactatagcgacgcacagggaactttgttgcgtcctagtaatttcagggaaaatattccgtgcacagactttggaggtacatgtggatttggcacatggcagtgaatggagatgaacacggcagtcttcagtaagtttgaccagctgcgctttgaggaaagcggacaaaatgtggagagaagcagcaggagttatttagagctgattgatggacaacgttcagatttactcacgagccacaaagtgatggatggcaacgacgctctcaaacacaggagaaatggtggagggaaggtgcgtcacaagcgtcaggctcttcaggatatggctcgaccgctgaagcagtggctctacaagcaccgggacaatccttatcccaccaagactgagaagatactgctggctcttgggtcccacatgaccctggttcaggtgtcaaattggtttgcgaatgcaaggcgtagactcaagaacacagttcgacagccggacttgagctgggctttacgtataaaactgtacaacaaatatgtccaaggcaacgcagagagactgagcattagcagtgatgacacaacatcagatgatggggagaacaatttgcagatgcaggccagcgagtccgactataacagagccgtgcacaagagcgttattcaggacagcagagtcaaagtgggccgaaacgcagacccctcggtttgtgatgattatgtttcgccaccgaaatacaagaacagcttgctgaaccgctatctgaatgattcccttcggcatgtaatggcctctgataaagttatggactctcggaagaggaaccattcgggatcgtttagctccaacgagtatgaggatgattttctctcgccctcttcagaagctgaggcaaacttcacctaccacacagtgacgctggactgcggcacacgccagagcgagagcggcgctcgtaaaggaggaaataatgagacctactggaaagagctccacgccgccatggccctgaccaacctggctcaagtaaaggagagctccgcggcgggtacaaccagctgtatcattcagaagtcttcccatatagcggagattaagactgtcaaagtgcccatacaaccccgacattag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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