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2019-03-25 14:33:24, GGRNA.v2 : RefSeq release 92 (Jan, 2019)

LOCUS       NM_001111977            2873 bp    mRNA    linear   PLN 20-OCT-2018
DEFINITION  Zea mays Zmhox1a homeobox protein (hox1a), mRNA.
ACCESSION   NM_001111977
VERSION     NM_001111977.1
KEYWORDS    RefSeq.
SOURCE      Zea mays
  ORGANISM  Zea mays
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD
            clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
            Zea.
REFERENCE   1  (bases 1 to 2873)
  AUTHORS   Bellmann R and Werr W.
  TITLE     Zmhox1a, the product of a novel maize homeobox gene, interacts with
            the Shrunken 26 bp feedback control element
  JOURNAL   EMBO J. 11 (9), 3367-3374 (1992)
   PUBMED   1354614
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from X67561.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X67561.1, SRR3147024.4049.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00780135, SAMN00780142
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2873
                     /organism="Zea mays"
                     /mol_type="mRNA"
                     /db_xref="taxon:4577"
                     /chromosome="8"
                     /map="8"
     gene            1..2873
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /note="Zmhox1a homeobox protein"
                     /db_xref="GeneID:542406"
     exon            1..724
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    252..254
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /note="upstream in-frame stop codon"
     CDS             264..2423
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /note="putative homeodomain-like transcription factor
                     superfamily protein"
                     /codon_start=1
                     /product="homeobox protein HOX1A"
                     /protein_id="NP_001105447.1"
                     /db_xref="GeneID:542406"
                     /translation="
MEKNIAHCPVEGNGEIENGASSSQNPESLEHSVLLSTSQTMPNNLGIRKNYKRAANRGKKGSQGLTGQAYTLMSSNSDVRVLRSTSSSKTTSTEHVQAPVQPAAKRRKMSRASNKSSTDEFSQIRKRVRYILNRMNYEQSLIEAYASEGWKNQSLDKIRPEKELERAKSEILRCKLRIREVFRNIDSLLSKGKIDETLFDSEGEISCEDIFCSTCGSNDATLGNDIILCDGACDRGFHQNCLNPPLRTEDIPMGDEGWLCPACDCKIDCIDLINELHGSNISIEDSWEKVFPDAAAMANDSKQDDAFDLPSDDSDDNDFDPNMPEEHVVGKDEESSEEDEDGGSDSDDSDFLTCSDDSEPLIDKKVDDLRLPSEDSEDDDYDPAGPDSDKDVEKKSSSDESDFTSDSDDFCKEISKSGHDEVSSPLLPDAKVGDMEKITAQAKTTSSADDPMETEIDQGVVLPDSRRRQAERLDYKKLYDEAYGEASSDSSDDEEWSGKNTPIIKSNEEGEANSPAGKGSRVVHHNDELTTQSTKKSLHSIHGSVDEKPGDLTSNGSNSTARKGHFGPVINQKLHEHFKTQPYPSRSVKESLAEELGLTFRQVNKWFETRRHSARVASSRKGISLDKHSPQNTNSQVTASMEPKEPEGTVVEESNVCLNGGTTISKEAVSSKVGSRTPGSDVGGSKVDSAEDQNPGPDLAEKARQKAIQQELRKKKMGR"
     misc_feature    894..1052
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /note="PHD finger found in Arabidopsis thaliana
                     pathogenesis-related homeodomain protein (PRHA) and
                     similar proteins; Region: PHD_PRHA_like; cd15504"
                     /db_xref="CDD:276979"
     misc_feature    order(894..896,936..950,963..965,1035..1037)
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276979"
     misc_feature    order(897..899,906..908,948..950,960..962,975..977,
                     984..986,1041..1043,1050..1052)
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:276979"
     misc_feature    1947..2108
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     exon            725..890
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /inference="alignment:Splign:2.1.0"
     exon            891..1014
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1127
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1128..1703
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1704..1979
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /inference="alignment:Splign:2.1.0"
     exon            1980..2069
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /inference="alignment:Splign:2.1.0"
     exon            2070..2855
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /inference="alignment:Splign:2.1.0"
     STS             2592..2698
                     /gene="hox1a"
                     /gene_synonym="GRMZM2G136369; homeobox1; Zmhox1a"
                     /standard_name="UMC1309"
                     /db_xref="UniSTS:500257"
ORIGIN      
aaggtgattgcgaatctggcttggcacatagagctttttttcattgtcagcttgttcgctgcggcttgctgcggctgcaatccggctgcggctgcggcttctacagtatttttctctctatgaattgcagctgcagcaatccaaacagctgcaacagtgtcggcttgcagccagccgaacacgccctgtgctcctcagaagatggttttctgagagtgctttctgtctactgtaaattgatgaaattttggtgaacatatactatggaaaaaaatatagctcactgtcctgttgagggcaatggtgagattgaaaatggtgcgagctctagtcagaatcctgagtctcttgagcattcagttttgctgtctacatctcaaacgatgccaaataacttggggataaggaaaaactataaaagggcagcaaacagaggtaaaaaaggttcccaaggactaacaggccaagcatatactttgatgtcatctaatagtgatgtcagggtgcttcgctccacatcaagttcaaagacaacatctactgagcatgttcaggctccagtacaaccggctgccaagagaagaaaaatgagcagagcctcaaacaaaagttcgactgatgagttttcacaaattcgtaaacgagttagatatattttgaaccgaatgaattatgagcaaagcctaattgaagcttatgctagcgaaggctggaaaaatcaaagtttggataagataagacctgagaaggagcttgaacgagccaaatcagaaatcttacgatgcaaattgagaatacgagaagtcttccggaatattgattctcttctctccaaggggaaaattgacgaaactttatttgattctgaaggagaaatatcttgcgaagatatcttttgttccacttgtggttcgaatgacgctacattgggtaatgatatcattctctgcgatggagcttgtgacagagggttccaccagaactgtttaaatcctcccctgcgtactgaagatatccccatgggagatgaaggatggctctgcccagcatgtgattgcaagatagattgtatagatctaataaatgaactccatgggagtaacatctccattgaggactcttgggagaaagtttttccagatgcagctgctatggcaaatgactctaaacaagatgacgcatttgatcttccatcagatgactcagacgacaatgactttgaccccaatatgcctgaagagcatgtggttggtaaggatgaagaatcgtctgaagaggatgaggatggaggatcagactctgatgactcagactttttgacatgttctgatgattcggaacctttgatagacaagaaggttgatgacctcagattaccttctgaagattcagaggatgatgactatgatccagcaggtcctgattcagataaagatgtcgaaaagaagtcaagttctgatgaatctgacttcacatctgactcagatgatttttgtaaggagatttcaaaatctggacatgatgaagtttcatcacctctattacccgatgccaaggtgggtgatatggaaaagattactgctcaagctaaaacaacaagttctgctgacgaccctatggagactgaaatagaccagggtgtggttttaccagattcaaggagacggcaagctgaacggttggactacaaaaagttgtatgatgaggcatatggtgaagcatcatctgattctagtgatgatgaagaatggtctgggaagaacacgccaataataaaaagcaatgaagagggtgaagccaattctcctgcgggaaaaggctccagagttgtgcaccataatgatgaactgactacacaaagcactaaaaaaagcttgcattctattcatggttcagtagatgagaaacctggagaccttacttctaatggcagcaacagcacagccaggaaaggacattttggcccagtaattaatcagaagctacatgaacattttaagacacaaccataccctagtcgttctgttaaagaaagtctggcagaagaactagggttaacatttcgtcaggttaacaaatggtttgaaactaggcgtcattccgcaagggtagcttcttccaggaaaggcatcagtctagataagcatagcccccaaaatactaatagtcaagtgacagctagtatggaacctaaagaacctgaggggactgtggtggaagaatctaatgtatgcctaaatgggggtactaccatctctaaagaagcagtgtcttcaaaagttggatcaagaacccctggaagtgatgtgggagggtcaaaagttgattctgctgaggatcagaatccggggcctgatcttgcagagaaggcaaggcaaaaggcaatacagcaggagttgaggaagaaaaaaatgggacgatgaagtttgtagacaaagatatgagccagaatttggactgctcctgaaatttccaggtcgggtcgtgatttcgctgccggtgctatggaccttgaaactttggctttgtatggctctatgtcggcagccaaaaaacatagatataccattacaactttacaagtcagctagctctcattagttcgtgccagtcaactagcaagcgcatcattcagtttttttttgtggggccattgctttccgttcttaggcaactgagagcttcctctgatttctggggcgctctataggaattagttatccttcagatttgtttgcagcgactcctggcattgcaaaagcgtacggctccgtaacgacagcagtgtactgcagaagatgtgtgttgttttcatcgatgttgaattttctggtaagatggaatgttgtaccaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]