2025-02-22 14:14:52, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS NM_001105218 2451 bp mRNA linear VRT 30-OCT-2024 DEFINITION Takifugu rubripes taste receptor, type 1, member 2b (tas1r2b), mRNA. ACCESSION NM_001105218 VERSION NM_001105218.2 KEYWORDS RefSeq. SOURCE Takifugu rubripes (Fugu rubripes) ORGANISM Takifugu rubripes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu. REFERENCE 1 (bases 1 to 2451) AUTHORS Ishimaru,Y., Okada,S., Naito,H., Nagai,T., Yasuoka,A., Matsumoto,I. and Abe,K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech Dev 122 (12), 1310-1321 (2005) PUBMED 16274966 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from LR584237.1. On Oct 30, 2024 this sequence version replaced NM_001105218.1. ##Evidence-Data-START## Transcript exon combination :: AB200912.1 [ECO:0000332] RNAseq introns :: partial sample support SAMN07340848, SAMN07340849 [ECO:0000350] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-182 LR584237.1 7263693-7263874 c 183-480 LR584237.1 7263305-7263602 c 481-1197 LR584237.1 7262501-7263217 c 1198-1401 LR584237.1 7262181-7262384 c 1402-1522 LR584237.1 7261918-7262038 c 1523-2451 LR584237.1 7260753-7261681 c FEATURES Location/Qualifiers source 1..2451 /organism="Takifugu rubripes" /mol_type="mRNA" /db_xref="taxon:31033" /chromosome="3" /map="3" gene 1..2451 /gene="tas1r2b" /note="taste receptor, type 1, member 2b" /db_xref="GeneID:100125678" CDS 1..2451 /gene="tas1r2b" /codon_start=1 /product="taste receptor, type 1, member 2b precursor" /protein_id="NP_001098688.2" /db_xref="GeneID:100125678" /translation="
MGCSLACLCLLGCVLYPLAQCTVPASEFRLEGDYLIGGLFEIHYEAFPTFHGRPQTMDCSSKFLILSNYRRFQLMRFAVAEINNSTSLLPNVTLGYEVFDHCTDAQSFSDVFKLLSVNNVIQPWNVPNKNVSKVVAVLGLFSSTSTLTVAPLFMSDFIPLISYGSSSSIFSEKAKFPSFLRTVHSSKKVMEVIVKILQYFKWHWVAFLYSSDDYGTDGLKLFIEKIKDTEICLAYTHSLDSSHYLSVFNQIDAQRINLIVVFAPHWHAIPLVQAAIRHNVTGKVWIAGEAWSLNKELPKEKGIKNIGTVIGVSQPVVTIPGFEDFLYSVKKGNRCESTEQQFCNQIYNCSQESADILAADPSYSFSVYSAVYSTAHALHNVLNCDFGKCDNGIPISPPVLLAQLKKSNFTLLTERVQFDENGDPRFGSYAVLFWNQTGDPENFGTCWFYPSVKIFINDSKIQWHSKEVPISQCSKDCKEGYAKRIEGIHQCCFKCEICPNGTFVNRTKDPFNCIDCEEHQWSAAGSTSCLPRTVEYVAFTDTAAVVILVGAGLLLALTLAMCVLFAINYNTPVVRSAGGPMCFLILGCLSLCSISIFFFFDKPTVAFCVLRFLPFVLFYTVCLACFVVRSFQIVSIFKIAAKFPQAHSWWMKYHGQWLVISVTFVIQAFLIIVSVSSDPPSPFRDIVSYPDKIILGCFMNLKTSSVSFVLLLLLCLLCFIFSYMGKDLPKNYNEAKAITFCLLLLILTWIIFTTASLLYQGKYIHSLNALAVLSSIYSFLLWYFLPKCYIIIFQPQKNTQKYFQGLIQDYTKTISQ"
sig_peptide 1..63 /gene="tas1r2b" /inference="COORDINATES: ab initio prediction:SignalP:6.0" exon 1..182 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 183..480 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 481..1197 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1198..1401 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1402..1522 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1523..2451 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" ORIGIN
atgggatgttctctggcttgcctgtgtctcctgggatgtgttctgtatccactggctcagtgcactgtcccagcctcagagtttaggctggaaggagattatttgattggtggcctttttgaaatccattacgaagccttcccaacctttcatggcagaccacaaaccatggactgctccagtaaattcctcattttgtcaaactatcgaaggtttcagttgatgagattcgccgtggcggaaatcaacaactccacgagcctcctgccaaatgtaactctcggttatgaggtgtttgaccactgcacggatgctcagagcttttcggacgttttcaaattactctcggtcaataatgtgatccaaccttggaacgtaccaaacaagaatgtgtccaaagtggtagcagtgctcggtctcttcagcagcacctctacgctgactgtggccccactgttcatgtctgatttcatcccactgatctcctatggatcctcaagttccatcttctcggaaaaggccaaatttccctctttcctgcgaacagtgcactccagcaaaaaagtgatggaagtgattgtaaaaattttgcagtacttcaagtggcactgggttgcctttctttacagcagtgatgattatggcaccgatgggcttaaactcttcatagagaagataaaggacactgagatctgcctggcctacactcacagtcttgacagcagtcattacttatcagtatttaaccagatcgatgcccagaggattaaccttatcgtggtttttgctccccattggcacgctatacctctggttcaagcagcaatacggcacaatgtcacgggcaaggtgtggatagcaggagaagcatggtctctaaacaaggagctcccgaaggagaaaggaatcaaaaacatcggaaccgtgatcggggtgtcccagcccgtggtgacgattcctggttttgaagattttctttattcggttaaaaaggggaatcgatgcgaaagcaccgagcagcagttctgcaaccagatttacaactgcagtcaagagagcgctgatatcctagctgcggacccttcttactcgttttccgtttattctgctgtctacagcactgctcacgccttgcacaacgtcttaaactgtgactttggtaaatgtgataacggcattcccatatcgccacccgtgcttctagcccagttaaagaagtcaaattttacactcttaaccgagagagttcagttcgatgagaatggtgatcccaggtttggctcctatgcggtgttgttctggaaccagaccggtgacccagagaatttcggcacctgttggttttacccttcggtcaaaatattcatcaatgacagcaaaatccagtggcactcaaaagaagtgcctatttcccagtgttccaaggactgtaaagaggggtatgcaaaaagaatagagggaatccatcaatgttgtttcaaatgtgaaatctgtccaaatggaacttttgtcaacagaacaaaggatcccttcaactgcatcgactgtgaggagcaccagtggtctgcagcaggaagcacatcgtgtctcccgcggacggtggagtacgtggcctttacggacacagcggcggtcgtgatcctggtcggagccggcctgttgctggctctcacgttagccatgtgtgttctctttgctatcaactacaacacgcctgtggtccgatctgccgggggacccatgtgctttctgatcttgggctgcctcagtctctgtagcatcagcatcttcttcttctttgacaaaccgactgttgccttttgcgttttaagattcctgccctttgttttattctacactgtctgtctcgcctgctttgtcgtccgctcctttcagatcgtcagcatttttaaaatagctgccaagttcccccaagcccacagctggtggatgaagtatcacggtcagtggctggtcatctccgtcacctttgtcattcaggcatttctgatcattgtcagcgtatcatctgaccccccctcacccttcagggacattgtctcttacccagacaaaatcatccttggatgtttcatgaatcttaaaacatcatctgtttcatttgttttacttctattgttgtgcctgctctgcttcattttttcctacatgggcaaagaccttccgaaaaattacaacgaggccaaagcgataaccttctgcctgctcctgctgatcctcacctggatcatatttaccaccgcgtccctgctttaccaaggcaaatacattcactcactgaacgctttggcagtgctctccagcatctactcctttttgttgtggtatttcctcccaaaatgttacatcatcatttttcagcctcagaagaacacacagaagtacttccaaggtctgattcaggattacaccaagactattagccagtag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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