2024-10-23 02:06:00, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001105218 2451 bp mRNA linear VRT 26-JUN-2020 DEFINITION Takifugu rubripes taste receptor, type 1, member 2b (tas1r2b), mRNA. ACCESSION NM_001105218 VERSION NM_001105218.1 KEYWORDS RefSeq. SOURCE Takifugu rubripes (Fugu rubripes) ORGANISM Takifugu rubripes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu. REFERENCE 1 (bases 1 to 2451) AUTHORS Ishimaru Y, Okada S, Naito H, Nagai T, Yasuoka A, Matsumoto I and Abe K. TITLE Two families of candidate taste receptors in fishes JOURNAL Mech. Dev. 122 (12), 1310-1321 (2005) PUBMED 16274966 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB200912.1. ##Evidence-Data-START## Transcript exon combination :: AB200912.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN07340848, SAMN07340849 [ECO:0000350] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2451 /organism="Takifugu rubripes" /mol_type="mRNA" /db_xref="taxon:31033" /chromosome="3" /map="3" gene 1..2451 /gene="tas1r2b" /note="taste receptor, type 1, member 2b" /db_xref="GeneID:100125678" CDS 1..2451 /gene="tas1r2b" /codon_start=1 /product="taste receptor, type 1, member 2b precursor" /protein_id="NP_001098688.1" /db_xref="GeneID:100125678" /translation="
MGCSLACLCLLGCVLYPLAQCTVPASEFRLEGDYLIGGLFEIHYEAFPTFHGRPQTMDCSSKFLILSNYRRFQLMRFAVAEINNSTSLLPNVTLGYEVFDHCTDAQSFSDVFKLLSVNNVIQPWNVPNKNVSKVVAVLGLFSSTSTLTVAPLFMSDFIPLISYGSSSSIFSEKAKFPSFLRTVHSSKKVMEVIVKILQYFKWHWVAFLYSSDDYGTDGLKLFIEKIKDTEICLAYTHSLDSSHYLSVFNQIDAQRINLIVVFAPHWHAIPLVQAAIRHNVTGKVWIAGEAWSLNKELPKEKGIKNIGTVIGVSQPVVTIPGFEDFLYSVKKGNRCESTEQQFCNQIYNCSQESADILAADPSYSFSVYSAVYSTAHALHNVLNCDFGKCDNGIPISPPVLLAQLKKSNFTLLTERVQFDENGDPRFGSYAVLFWNQTGDPENFGTCCFYPSVKIFINDSKIQWHSKEVPISQCSKDCKEGYAKRIEGIHQCCFKCEICPNGTFVNRTKDPFNCIDCEEHQWSAAGSTSCLPRTVEYVAFTDTAAVVILVGAGLLLALTLAMCVLFAINYNTPVVRSAGGPMCFLILGCLSLCSISIFFFFDKPTVAFCVLRFLPFVLFYTVCLACFVVRSFQIVSIFKIAAKFPQAHSWWMKYHGQWLVISVTFVIQAFLIIVSVSSDPPSPFRDIVSYPDKIILGCFMNLKTSSVSFVLLLLLCLLCFIFSYMGKDLPKNYNEAKAITFCLLLLILTWIIFTTASLLYQGKYIHSLNALAVLSSIYSFLLWYFLPKCYIIIFQPQKNTQKYFQGLIQDYTKTISQ"
sig_peptide 1..63 /gene="tas1r2b" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 82..1413 /gene="tas1r2b" /note="Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_type1; cl10011" /db_xref="CDD:471960" misc_feature 1405..1566 /gene="tas1r2b" /note="Nine Cysteines Domain of family 3 GPCR; Region: NCD3G; pfam07562" /db_xref="CDD:462210" misc_feature 1624..2379 /gene="tas1r2b" /note="seven-transmembrane G protein-coupled receptor superfamily; Region: 7tm_GPCRs; cl28897" /db_xref="CDD:475119" misc_feature 1627..1701 /gene="tas1r2b" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:410628" misc_feature 1735..1800 /gene="tas1r2b" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:410628" misc_feature 1825..1893 /gene="tas1r2b" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:410628" misc_feature 1972..2022 /gene="tas1r2b" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:410628" misc_feature 2098..2169 /gene="tas1r2b" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:410628" misc_feature 2203..2271 /gene="tas1r2b" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:410628" misc_feature 2284..2361 /gene="tas1r2b" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:410628" exon 1..182 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 183..480 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 481..1197 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1198..1401 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1402..1522 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" exon 1523..2451 /gene="tas1r2b" /inference="alignment:Splign:2.1.0" ORIGIN
atgggatgttctctggcttgcctgtgtctcctgggatgtgttctgtatccactggctcagtgcactgtcccagcctcagagtttaggctggaaggagattatttgattggtggcctttttgaaatccattacgaagccttcccaacctttcatggcagaccacaaaccatggactgctccagtaaattcctcattttgtcaaactatcgaaggtttcagttgatgagattcgccgtggcggaaatcaacaactccacgagcctcctgccaaatgtaactctcggttatgaggtgtttgaccactgcacggatgctcagagcttttcggacgttttcaaattactctcggtcaataatgtgatccaaccttggaacgtaccaaacaagaatgtgtccaaagtggtagcagtgctcggtctcttcagcagcacctctacgctgactgtggccccactgttcatgtctgatttcatcccactgatctcctatggatcctcaagttccatcttctcggaaaaggccaaatttccctctttcctgcgaacagtgcactccagcaaaaaagtgatggaagtgattgtaaaaattttgcagtacttcaagtggcactgggttgcctttctttacagcagtgatgattatggcaccgatgggcttaaactcttcatagagaagataaaggacactgagatctgcctggcgtacactcacagtcttgacagcagtcattacttatcagtatttaaccagatcgatgcccagaggattaaccttatcgtggtttttgctccccattggcacgctatacctctggttcaagcagcaatacggcacaatgtcacgggcaaggtgtggatagcaggagaagcatggtctctaaacaaggagctcccgaaggagaaaggaatcaaaaacatcggaaccgtgatcggggtgtcccagcccgtggtgacgattcctggttttgaagattttctttattcggttaaaaaggggaatcgatgtgaaagcaccgagcagcagttctgcaaccagatttacaactgcagtcaagagagcgctgatatcctagctgcggacccttcttactcgttttccgtttattctgctgtctacagcactgctcacgccttgcacaacgtcttaaactgtgactttggtaaatgtgataacggcattcccatatcgccacccgtgcttctagcccagttaaagaagtcaaattttacactcttaaccgagagagttcagttcgatgagaatggtgatcccaggtttggctcctatgcggtgttgttctggaaccagaccggtgacccagagaatttcggcacctgttgtttttacccttcggtcaaaatattcatcaatgacagcaaaatccagtggcactcaaaagaagtgcctatttcccagtgttccaaggactgtaaagaggggtatgcaaaaagaatagagggaatccatcaatgttgtttcaaatgtgaaatctgtccaaatggaacttttgtcaacagaacaaaggatcccttcaactgcatcgactgtgaggagcaccagtggtctgcagcaggaagcacatcgtgtctcccgcggacggtggagtacgtggcctttacggacacagcggcggtcgtgatcctggtcggagccggcctgttgctggctctcacgttagccatgtgtgttctctttgctatcaactacaacacgcctgtggtccgatctgccgggggacccatgtgctttctgatcttgggctgcctcagtctctgtagcatcagcatcttcttcttctttgacaaaccgactgttgccttttgcgttttaagattcctgccctttgttttattctacactgtctgtctcgcctgctttgtcgtccgctcctttcagatcgtcagcatttttaaaatagctgccaagttcccccaagcccacagctggtggatgaagtatcacggtcagtggctggtcatctccgtcacctttgtcattcaggcatttctgatcattgtcagcgtatcatctgaccccccctcacccttcagggacattgtctcttacccagacaaaatcatccttggatgtttcatgaatcttaaaacatcatctgtttcatttgttttacttctattgttgtgcctgctctgcttcattttttcctacatgggcaaagaccttccgaaaaattacaacgaggccaaagcgataaccttctgcctgctcctgctgatcctcacctggatcatatttaccaccgcgtccctgctttaccaaggcaaatacattcactcactgaacgctttggcagtgctctccagcatctactcctttttgttgtggtatttcctcccaaaatgttacatcatcatttttcagcctcagaagaacacacagaagtacttccaaggtctgattcaggattacaccaagactattagccagtag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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