2024-04-20 22:01:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001104833 1344 bp mRNA linear VRT 24-JUN-2020 DEFINITION Oryzias latipes GS homeobox 1 (gsx1), mRNA. ACCESSION NM_001104833 VERSION NM_001104833.1 KEYWORDS RefSeq. SOURCE Oryzias latipes (Japanese medaka) ORGANISM Oryzias latipes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias. REFERENCE 1 (bases 1 to 1344) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1344) AUTHORS Deschet K, Bourrat F, Chourrout D and Joly JS. TITLE Expression domains of the medaka (Oryzias latipes) Ol-Gsh 1 gene are reminiscent of those of clustered and orphan homeobox genes JOURNAL Dev. Genes Evol. 208 (5), 235-244 (1998) PUBMED 9683739 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF035573.1. ##Evidence-Data-START## Transcript exon combination :: AF035573.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00029883, SAMD00029884 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1344 AF035573.1 34-1377 FEATURES Location/Qualifiers source 1..1344 /organism="Oryzias latipes" /mol_type="mRNA" /db_xref="taxon:8090" /chromosome="14" /map="14" gene 1..1344 /gene="gsx1" /gene_synonym="gsh-1; Gsh1" /note="GS homeobox 1" /db_xref="GeneID:100049468" CDS 72..803 /gene="gsx1" /gene_synonym="gsh-1; Gsh1" /note="developmental transcription factor" /codon_start=1 /product="GS homeobox 1" /protein_id="NP_001098303.1" /db_xref="GeneID:100049468" /translation="
MPRSFLVDSLILREANEKGSENNPPLFPYAMHSPHHAHGLPGSCHSRKAGMLCFCPLCMAASQLHPSPPTLPLLKASFPPFSSQYCHSALSRQHASSNSISLSQGAGIYQAAYSVPDPRQFHCISLENSNGKLQSSKRMRTAFTSTQLLELEREFTSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKSSGQRTGSHNCKCSSLSAARCSEEEDDDIPISPSSSEKEDVDLSVSP"
misc_feature order(480..494,498..500,549..551,567..569,606..608, 612..617,624..629,633..641,645..650) /gene="gsx1" /gene_synonym="gsh-1; Gsh1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(486..488,495..497,615..617,624..629,636..638) /gene="gsx1" /gene_synonym="gsh-1; Gsh1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 489..647 /gene="gsx1" /gene_synonym="gsh-1; Gsh1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
ggccgcttcccgacaggagcacgctgacgcaacgagcaactccgaacgcgctgagcaacaagtttgaaaacatgccgagatcttttctcgtggattcgttgattttaagggaggccaacgaaaaggggagtgagaataacccacctttatttccgtacgccatgcactcgccgcaccacgcgcacgggctgccggggtcttgccactccagaaaagcaggaatgctgtgtttctgtccgctttgcatggcggcgtcccagctccatccgtctccaccgactctgccgctcctcaaggcgtcatttccccccttcagctcgcagtactgtcactcagctctgtccaggcaacacgcttcatcaaacagcatcagcctcagccaaggagcggggatttaccaagctgcgtattcggttccagacccgcgacagttccactgcatttccctcgaaaactcaaacgggaaacttcaaagcagcaagcgcatgcgcaccgccttcaccagcacacaacttttggagctggagcgagagttcacttccaacatgtacctgtccagactgaggcgcatcgagattgccacatacctaaacttgtccgagaaacaggtgaaaatctggttccagaaccgcagggtgaagcacaagaaggaaggcaaaagcagcggccaaaggactggatcacataactgcaaatgctcgtccctgtcagccgccagatgctcggaggaagaggacgatgacattcccatatctccatcatcgtcagaaaaggaggatgtggacctgtccgtttctccctgagctcccaaaacgcccctccaattccccatgagtttgaatgcagcagacggaaaatcttgtacatagacagataatatttaatcagacccaacaggtccaacattgtataaattgtatatttgttgtacgttttgtacgtagtttttttaaaaactccattgttattgccactccagtgaacgtgaaaggcatatatgagatgaaaaaccctctggaaaaaagatagcgttattgtttattagatttttttggggggggaaacatgttgtgtctgggaaacactgcttagatccacttctcaatggagctgagacagtttgaggtagaaattggtcaagaagctgataccactctgaaattatatctccctgtgtcatggcaaaatatttatttatttaaaaatgtgtatacttaaataaaaaaaatatttctgggttgcaccctatttctcctatcgtcgtggtttagttcaagaaaagtgcacgactcattacgcacaaaagcgcaaaaaccggaacgcagaaaacataaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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