2024-04-26 23:17:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001103312 2686 bp mRNA linear MAM 03-FEB-2022 DEFINITION Bos taurus orthopedia homeobox (OTP), mRNA. ACCESSION NM_001103312 VERSION NM_001103312.1 KEYWORDS RefSeq. SOURCE Bos taurus (cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 2686) AUTHORS Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G, Roberts M, Subramanian P, Yorke JA and Salzberg SL. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol. 10 (4), R42 (2009) PUBMED 19393038 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC149939.1. ##Evidence-Data-START## Transcript exon combination :: BC149939.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03145419 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2686 /organism="Bos taurus" /mol_type="mRNA" /db_xref="taxon:9913" /chromosome="10" /map="10" /breed="Hereford" gene 1..2686 /gene="OTP" /note="orthopedia homeobox" /db_xref="GeneID:100125232" /db_xref="VGNC:VGNC:55130" misc_feature 113..115 /gene="OTP" /note="upstream in-frame stop codon" CDS 170..1147 /gene="OTP" /codon_start=1 /product="homeobox protein orthopedia" /protein_id="NP_001096782.1" /db_xref="GeneID:100125232" /db_xref="VGNC:VGNC:55130" /translation="
MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT"
misc_feature 488..634 /gene="OTP" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(488..490,497..499,617..619,626..631) /gene="OTP" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1076..1129 /gene="OTP" /note="OAR domain; Region: OAR; pfam03826" /db_xref="CDD:427530" ORIGIN
tggacattataatgcaagaagccccctttttaaccacaaaccgaattttctttcatttaggtgatctatatatatctatatcgtatagcttatagcttatatctattttaaataacttaaagccgctaaaatttgggggggaacagctttcgccctggagcggtgcgcgatgctgtctcacgccgacctcctggacgccaggctaggtatgaaagatgccgccgagcttctgggccaccgggaggcggtgaagtgtaggctgggcgtagggggctctgaccccgggggccacccgggggacctagcgcccaactccgacccagtcgagggagccactctgctgcctggggaggacatcaccacagtgggctctacgccggcctcgctggcggtgagcgctaaggacccggacaagcagccggggccccagggcggcccgaaccccagccaagccggtcagcagcagggccaacagaagcaaaagcgccatcggacgcgcttcacccctgctcagctcaacgaactggagaggagcttcgccaagactcactaccccgacatcttcatgcgggaggagctggcacttcgtattgggctgaccgagtcccgagtgcaggtctggttccagaaccggcgcgctaagtggaagaagcgcaagaagaccaccaacgtgttccgcgcgccgggcacgctgctgcccacgccaggcctgccccagttcccgtcggctgccgccgccgccgccgccgccatgggcgacagcctgtgctctttccatgccaacgacacccgctgggcggcggccgccatgccgggcgtgtcgcagctgccgctgccgccggcgctgggcaggcagcaagccatggcgcagtcgctgtcccagtgcagcctggcggccgggccgccgcccaactccatgggcctgtccaacagcttggcgggctccaatggcgcggggctgcagtcgcatctctaccagcccgccttccccggcatggtgcccgcctccctccccggccccagcaacgtctccggctcgccccagctctgcagctccccggacagcagcgacgtgtggcggggaacgagcatcgcctccctccgccgcaaggcgctagagcacacagtctccatgagcttcacttaataccgccgcgcccggcccgctccgccccctgcaccgccccccggtccgccccgaggccccggcggcgcgcgccccggccccccgctccctgccccggccctcgcccgggcgccctgccccgttctcccgccgcggccccagccccggcgccctgctccctccccgcccggcctccaccacgtctcgtccggcccttccttccctccgtcctccactctcccgggctcaccccgagcctcggcccgcgaggcctccctcccgcctgattccgctccccgcaccccacccgcctcacctggcccctccctccgcccagtcgcgagcgcccggccccacgcctccccgcgccccgccgcctcccggcccgcactcgccgtgctcgcgccctccgcctggccttccgacgggcggcttgcccatccacaccttctccacgacgcctgcggccccctcgccccgcgcctcgcccctggtcccttcttgcccagctcctcacgcccccgcctcccgcgccctgccgaaagcatccttcccgccattttacttagcagggagtagactcaggatctgaaatcagacaccagtggactggtttgtgggcagaaacacacacacccgcactctcgctcactctcagacactacacacgcgcgcgcacacactcatacacagtgcacctaggtcacacacggacgtgttcaagggacagcacaatgttaggatttttgtctaaaaggagggcaagcatctactaccaaccgcctcatctgagggcctaactgattacaatttgatttatccctgtattcttgcaccgaactcctttctttcttctcccactagccgttccttgccttgtccatccagtcacatacctgcagccgtgtattggcttgcaagagaacgtttctgtttcatcttacttttattttcttaagtacaactatgtgagggtattgagggaaggcttctcaggaggaacatgtcagtggattgggtggctggagtagattaaagcagtcatgtgatgaagaggtgatcttacccattttgataaatgtctttatgagaaagaaagaaacacgtaagaaaattttccttttgtaaaagcaaaagccacatcttttttttctggatccttcaggactggggttggtttgcttccttttttccgtttctctctcctcgcgctgctctgtgcccttggttgtttttgtggtcgtcctgtctttcctcgtgcccctcggccactgccctggcccctgccggctgccgaagggtgcactcaggcatctacaaccctgcaactttgtacagagaaacgcaatcagctctttctgcatgtgctggtcaaatccaaacccagagaacagaagcgctttcgaagaatgaacaaacatgtgaaataggatgttttgtgtagataaagcattcttgttacatactggtcaatttgtgatatgttttaacttattgtctgtgcttatttatggaatttggttttcttaataaatgtttgagctaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]