LOCUS       NM_001096910            1524 bp    mRNA    linear   VRT 20-JUN-2021
DEFINITION  Xenopus laevis homeobox B6 S homeolog (hoxb6.S), mRNA.
ACCESSION   NM_001096910
VERSION     NM_001096910.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC123270.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC123270.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00012418, SAMD00012419
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="9_10S"
                     /map="9_10S"
     gene            1..1524
                     /gene="hoxb6.S"
                     /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2"
                     /note="homeobox B6 S homeolog"
                     /db_xref="GeneID:779290"
                     /db_xref="Xenbase:XB-GENE-1006009"
     exon            1..449
                     /gene="hoxb6.S"
                     /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..709
                     /gene="hoxb6.S"
                     /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2"
                     /note="homeo box B6; Hox 2.2"
                     /codon_start=1
                     /product="homeobox protein Hox-B6"
                     /protein_id="NP_001090379.1"
                     /db_xref="GeneID:779290"
                     /db_xref="Xenbase:XB-GENE-1006009"
                     /translation="

MSSYFVNSTFPVTLPGGQEPFLGQIPLYSSGYADPLRHYSASYGATGVQDKSYAPGPYFQQASGAYSRTAACDYGAAGFYRDKEVSCALSSLEEQSQYNQEQRKADCAHNKLVYEEQDEAKCATPVYPWMQRMNSCNSSMFGPSGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHSLCLTERQIKIWFQNRRMKWKKESKLLNSSVQSAGEDEEKPTE"

     misc_feature    order(473..487,491..493,542..544,560..562,599..601,
                     605..610,617..622,626..634,638..643)
                     /gene="hoxb6.S"
                     /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(479..481,488..490,608..610,617..622,629..631)
                     /gene="hoxb6.S"
                     /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    482..640
                     /gene="hoxb6.S"
                     /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            450..1491
                     /gene="hoxb6.S"
                     /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

caggaagcaccgccgctgcctcctcctcctcctcccaatgagttcctattttgtcaactccactttcccggtaactctgcccggtgggcaggaacccttcctgggacagatcccgttatattcctcaggatatgcggatcctttaaggcattattctgccagctacggggccacaggggtccaggacaagagctacgcgcccggcccgtatttccagcaggcgagtggagcttacagtcggacggcggcgtgcgattatggcgcagcgggattttacagggacaaggaggtttcgtgcgctctttcctcgctggaggagcagtcgcagtacaaccaggagcagcgcaaagcggactgtgcgcacaacaaactggtgtatgaggagcaagacgaggcaaagtgcgccactcctgtctacccctggatgcaaaggatgaactcgtgcaacagttctatgttcgggcccagtggaaggagagggagacagacctacaccaggtaccagactctggagctggaaaaggaatttcacttcaaccgctacttgacccggaggcgcaggatcgaaattgcgcattctctttgcctcaccgagcgccaaatcaagatctggttccagaacaggaggatgaagtggaaaaaggagagtaaactactcaattcctcggtacagagcgcgggggaggacgaggagaagccgaccgagtgacactgcgcctccgactgcgtcaccgcaacattgcgcacttctatccttgtaccttgaataagttattgttgcacacagactggtgaaaggaacctgaatgataatcctccaactacctatatgtctatcactgtctgtctgcaatatccctcctacatgagtacaacacatccagtaaatatcacacacacacacacattgtatataaatatatatatgtacaatcgcacacacacacaataaaagcgcactcctccaggcgtcttgtcccatgcacgatttggcataatcattctcgctgtctattgtgtgtttaattcctatgtctactgaaagtacaatactacctagcaacaaattgtgaccttctctattttatgattattattttttatgtgttggtcgtctgtgtttttttctacgtgtagtttggaaaggactgatgaagtagcagcagcagcagcagcagcagagttaatgtgtactagtgagtgctgctgcccgtgtgtatataggcatctcattgtatcattatacaagtcacttatactggaagcacaagcccaatgtccagtctgtagattttactagagattcccctgaggaccaggactgatcagcttcattaatacacaggctttatcccctgcatcacaaacagcagcagcaacaacctgaatcactaacctgaatcccaacacaagggacaaaattcatctctcctccaattccatccacacgcagctcagtctgggatgtttcattaaatgttattgaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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