LOCUS       NM_001091815            2343 bp    mRNA    linear   VRT 28-APR-2025
DEFINITION  Xenopus laevis LTV1 ribosome biogenesis factor L homeolog (ltv1.L),
            mRNA.
ACCESSION   NM_001091815
VERSION     NM_001091815.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097559.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097559.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00012418, SAMD00012419
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="5L"
                     /map="5L"
     gene            1..2343
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /note="LTV1 ribosome biogenesis factor L homeolog"
                     /db_xref="GeneID:443630"
                     /db_xref="Xenbase:XB-GENE-1005073"
     exon            1..296
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    258..260
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /note="upstream in-frame stop codon"
     CDS             294..1703
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /note="LTV1 homolog"
                     /codon_start=1
                     /product="protein LTV1 homolog"
                     /protein_id="NP_001085284.1"
                     /db_xref="GeneID:443630"
                     /db_xref="Xenbase:XB-GENE-1005073"
                     /translation="

MPHRKKKPFIENKKAVTFHLVHRSQRDPLAADETAPQRVLLPADKADTEKRKEEQRDFGVFFDDDYNYLQHLKERGPSELIPSATSKSKSCIITDQDGDKEKEPQHVPGPSINLPSSVFASEFEEDVGLLNKAAPVRGLCLDLDPDIVAALDEDFDFDDPENQLDDDFILQANSDDLRRSSHEKDDDDDDWEDVESGSEENDYDSDGTVSDEDDGEGDGARKEFLFMQEETKSRFTEYSMTSSVIRRNEQLTLLDERFEKFYEQFDDDEIGALDNTELEGFIDSNSGRLEEVINDYYKQKAKDCVKLKNLTPRDGMDSVTEEDDEDKEDMQTIVIEEPREKWDCESILSTYSNLYNHPQIIKDPPKAKLIRVSVKTGIPMDVLPGRGLTAKQVERMEMINSSDIPRVSTHPRKDESKEERKARKQAIKEERKERRVEKKSNKLAFKEEKSRQVKEQLNLKQNLQGLKLS"

     misc_feature    330..1364
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /note="Low temperature viability protein; Region: LTV;
                     pfam04180"
                     /db_xref="CDD:461211"
     misc_feature    363..452
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q4V838.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    522..632
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q4V838.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    816..953
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q4V838.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1488..1652
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q4V838.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            297..428
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
     exon            429..617
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
     exon            618..705
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
     exon            706..829
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
     exon            830..1073
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1201
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
     exon            1202..1338
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
     exon            1339..1391
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
     exon            1392..1589
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
     exon            1590..2325
                     /gene="ltv1.L"
                     /gene_synonym="ltv1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

accaaaccataaatgcaaggggcgacttgtttttgatctggtgaatttactgggatgcattgtttttataaactgctaagtaaccgtggcaccgtgtatatatacatttaaaacgtcattctttattttattctgtagaccagaaatagcttcgatcgcggagcacacgcaataccccgagaatatttttggtgtgatccaatgtggcggaggcagcgtgggtagttggggactgctaggagtttatggcgtgttggtgatcttgtctgacagctctccgtgtacatttcagaatgcctcaccgaaagaagaaaccatttatagaaaataagaaagcagtcacctttcacctggtgcacaggagtcagagggatccattagccgctgatgaaactgctcctcagagagtgttgttgcctgctgataaggcagatacagaaaaacgtaaagaagaacaaagagattttggggttttctttgacgacgactacaattaccttcagcacctcaaagagaggggcccttcagagcttattccctcagcgaccagcaagtcaaagagctgcattatcactgatcaggatggtgacaaggaaaaggagcctcagcatgttcccggaccatcaataaatttaccatcttccgtgtttgcttctgagtttgaggaagatgttggattgttaaataaagcagctcctgttcgaggtctatgtcttgacttggatccagatattgtggcagctttggatgaagattttgactttgatgatccagagaatcagttggatgatgactttatcttacaggctaatagtgatgacctccggagatcatcccatgaaaaagatgatgatgacgatgactgggaggatgttgagagtgggagtgaggaaaatgactatgattcagatggaactgtttcagatgaggatgatggggagggtgatggtgccagaaaagagtttctgtttatgcaagaggaaacgaaaagtcgttttacagaatattccatgacatcatctgttattaggaggaatgagcaactcacccttcttgatgaaagatttgaaaagttttatgaacaatttgatgatgatgaaatcggagccttggataacacagaattggaaggattcattgactcaaacagtggtcgattggaagaagtaataaatgattactacaagcaaaaagcaaaagactgtgtgaaactgaaaaacctaacacctagagatggtatggattcagtcactgaggaagatgacgaggacaaagaagatatgcaaactatagttattgaggagcccagagaaaagtgggactgcgaatctatcttgagtacgtactctaacttatacaatcacccacagattatcaaggatccacccaaggcaaaactaatacgcgtatctgtgaaaactggtattcctatggatgtccttcctggaaggggactcactgccaagcaggttgaacgaatggaaatgattaacagtagtgacatacctagggtgtcaacacatccacgcaaggatgaatcaaaagaagagcgcaaagctagaaaacaagccattaaagaagagcgcaaagaaagaagagtggaaaagaaatccaataaactggcattcaaagaagaaaaaagcagacaagtaaaagagcagcttaatcttaaacagaatcttcaagggctcaagctatcttaacaaaattgttaactggagctgcccctttacgactatgaagaagaggagactgacaccaaattatcataccagcacgaccaacacaatttgcattgccagtgctgaaacagaatgctgaactgtattcagcaaaaaattcctttcagaagaagatacaatagggattgtaaaaaaaaaagagaatttcgataaacttaatttactattttaatataaaactgtacattatccttaatatggattgtgtttattgccatttgacatctatcaaacatgatccttatacatggccaagtgaataaatgtcccttcatctttttatgtattaaatatatttttggtttggcatcttctagcattatatcttaatagtggaggtcaagaaatctcagtaagtaatctctaagtaagattcaggggctggaaaatgtaaagagggatgaaaaaaagatctgtttgatcattacaattttgtggtcacaccacctaaataccacacccattttacaaaatttgggcaggttatggaaaggttacaacacatttctgggacttttagggtcatgttgtatgtattataataaatagttctgctaataaagtgtgagtccctgttccaccataaaaaaaaaaaaaaaaa

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